# Copyright (C) 2017-2022 Open Information Security Foundation
# Copyright (c) 2015-2017 Jason Ish
#
# You can copy, redistribute or modify this Program under the terms of
# the GNU General Public License version 2 as published by the Free
# Software Foundation.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# version 2 along with this program; if not, write to the Free Software
# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
# 02110-1301, USA.

from __future__ import print_function

import sys
import re
import os.path
import logging
import argparse
import time
import hashlib
import fnmatch
import subprocess
import shutil
import glob
import io
import tempfile
import signal
import errno
from collections import namedtuple

try:
    # Python 3.
    from urllib.error import URLError
except ImportError:
    # Python 2.7.
    from urllib2 import URLError

try:
    import yaml
except:
    print("error: pyyaml is required")
    sys.exit(1)

from suricata.update import (
    commands,
    config,
    configs,
    engine,
    exceptions,
    extract,
    loghandler,
    net,
    notes,
    parsers,
    rule as rule_mod,
    sources,
    util,
    matchers as matchers_mod
)

from suricata.update.version import version
try:
    from suricata.update.revision import revision
except:
    revision = None

SourceFile = namedtuple("SourceFile", ["filename", "content"])

if sys.argv[0] == __file__:
    sys.path.insert(
        0, os.path.abspath(os.path.join(__file__, "..", "..", "..")))

# Initialize logging, use colour if on a tty.
if len(logging.root.handlers) == 0:
    logger = logging.getLogger()
    loghandler.configure_logging()
    logger.setLevel(level=logging.INFO)
else:
    logging.basicConfig(
        level=logging.INFO,
        format="%(asctime)s - <%(levelname)s> - %(message)s")
    logger = logging.getLogger()

# If Suricata is not found, default to this version.
DEFAULT_SURICATA_VERSION = "6.0.0"

# The default filename to use for the output rule file. This is a
# single file concatenating all input rule files together.
DEFAULT_OUTPUT_RULE_FILENAME = "suricata.rules"

INDEX_EXPIRATION_TIME = 60 * 60 * 24 * 14

# Rule keywords that come with files
file_kw = ["filemd5", "filesha1", "filesha256", "dataset", "lua"]

def strict_error(msg):
    logger.error(msg)
    if config.args().fail:
        sys.exit(1)

class Fetch:

    def __init__(self):
        self.istty = os.isatty(sys.stdout.fileno())

    def check_checksum(self, tmp_filename, url, checksum_url=None):
        try:
            if not isinstance(checksum_url, str):
                checksum_url = url[0] + ".md5"
            net_arg=(checksum_url,url[1])
            local_checksum = util.md5_hexdigest(open(tmp_filename, "rb").read())
            remote_checksum_buf = io.BytesIO()
            logger.info("Checking %s." % (checksum_url))
            net.get(net_arg, remote_checksum_buf)
            remote_checksum = remote_checksum_buf.getvalue().decode().strip()
            logger.debug("Local checksum=|%s|; remote checksum=|%s|" % (
                local_checksum, remote_checksum))
            if local_checksum == remote_checksum:
                os.utime(tmp_filename, None)
                return True
        except Exception as err:
            logger.warning("Failed to check remote checksum: %s" % err)
        return False

    def progress_hook(self, content_length, bytes_read):
        if config.args().quiet or not self.istty:
            return
        if not content_length or content_length == 0:
            percent = 0
        else:
            percent = int((bytes_read / float(content_length)) * 100)
        buf = " %3d%% - %-30s" % (
            percent, "%d/%d" % (bytes_read, content_length))
        sys.stdout.write(buf)
        sys.stdout.flush()
        sys.stdout.write("\b" * 38)

    def progress_hook_finish(self):
        if config.args().quiet or not self.istty:
            return
        sys.stdout.write("\n")
        sys.stdout.flush()

    def url_basename(self, url):
        """ Return the base filename of the URL. """
        filename = os.path.basename(url).split("?", 1)[0]
        return filename

    def get_tmp_filename(self, url):
        url_hash = util.md5_hexdigest(url.encode("utf-8"))
        return os.path.join(
            config.get_cache_dir(),
            "%s-%s" % (url_hash, self.url_basename(url)))

    def fetch(self, url):
        net_arg = url
        checksum = url[2]
        url = url[0]
        tmp_filename = self.get_tmp_filename(url)
        if config.args().offline:
            if config.args().force:
                logger.warning("Running offline, skipping download of %s", url)
            logger.info("Using latest cached version of rule file: %s", url)
            if not os.path.exists(tmp_filename):
                logger.error("Can't proceed offline, "
                             "source {} has not yet been downloaded.".format(url))
                sys.exit(1)
            return self.extract_files(tmp_filename)
        if not config.args().force and os.path.exists(tmp_filename):
            if not config.args().now and \
               time.time() - os.stat(tmp_filename).st_mtime < (60 * 15):
                logger.info(
                    "Last download less than 15 minutes ago. Not downloading %s.",
                    url)
                return self.extract_files(tmp_filename)
            if checksum:
                if self.check_checksum(tmp_filename, net_arg, checksum):
                    logger.info("Remote checksum has not changed. "
                                "Not fetching.")
                    return self.extract_files(tmp_filename)
        if not os.path.exists(config.get_cache_dir()):
            os.makedirs(config.get_cache_dir(), mode=0o770)
        logger.info("Fetching %s." % (url))
        try:
            tmp_fileobj = tempfile.NamedTemporaryFile()
            net.get(
                net_arg,
                tmp_fileobj,
                progress_hook=self.progress_hook)
            shutil.copyfile(tmp_fileobj.name, tmp_filename)
            tmp_fileobj.close()
        except URLError as err:
            if os.path.exists(tmp_filename):
                if config.args().fail:
                    strict_error("Failed to fetch {}: {}".format(url, err))
                else:
                    logger.error("Failed to fetch {}, will use latest cached version: {}".format(url, err))
                return self.extract_files(tmp_filename)
            raise err
        except IOError as err:
            self.progress_hook_finish()
            logger.error("Failed to copy file: {}".format(err))
            sys.exit(1)
        except Exception as err:
            raise err
        self.progress_hook_finish()
        logger.info("Done.")
        return self.extract_files(tmp_filename)

    def run(self, url=None):
        files = {}
        if url:
            try:
                fetched = self.fetch(url)
                files.update(fetched)
            except URLError as err:
                url = url[0] if isinstance(url, tuple) else url
                strict_error("Failed to fetch {}: {}".format(url, err))
        else:
            for url in self.args.url:
                files.update(self.fetch(url))
        return files

    def extract_files(self, filename):
        files = extract.try_extract(filename)
        if files:
            return files

        # The file is not an archive, treat it as an individual file.
        basename = os.path.basename(filename).split("-", 1)[1]
        if not basename.endswith(".rules"):
            basename = "{}.rules".format(basename)
        files = {}
        files[basename] = open(filename, "rb").read()
        return files

def load_filters(filename):

    filters = []

    with open(filename) as fileobj:
        for line in fileobj:
            line = line.strip()
            if not line or line.startswith("#"):
                continue
            line = line.rsplit(" #")[0].strip()

            try:
                if line.startswith("metadata-add"):
                    rule_filter = matchers_mod.AddMetadataFilter.parse(line)
                    filters.append(rule_filter)
                else:
                    line = re.sub(r'\\\$', '$', line)  # needed to escape $ in pp
                    rule_filter = matchers_mod.ModifyRuleFilter.parse(line)
                    filters.append(rule_filter)
            except Exception as err:
                raise exceptions.ApplicationError(
                    "Failed to parse modify filter: {}".format(line))

    return filters

def load_drop_filters(filename):
    matchers = load_matchers(filename)
    filters = []

    for matcher in matchers:
        filters.append(matchers_mod.DropRuleFilter(matcher))

    return filters

def parse_matchers(fileobj):
    matchers = []

    id_set_matcher = matchers_mod.IdSetRuleMatcher()

    for line in fileobj:
        line = line.strip()
        if not line or line.startswith("#"):
            continue
        line = line.rsplit(" #")[0]
        matcher = matchers_mod.parse_rule_match(line)
        if not matcher:
            logger.warn("Failed to parse: \"%s\"" % (line))
        else:
            # If matcher is an IdRuleMatcher
            if isinstance(matcher, matchers_mod.IdRuleMatcher):
                for sig in matcher.signatureIds:
                    if len(sig) == 2:
                        # The "set" matcher only supports gid:sid.
                        id_set_matcher.add(sig[0], sig[1])
                    elif len(sig) == 3:
                        # This must also have a rev, don't add to set,
                        # but add as its own IdSetRuleMatcher.
                        matchers.append(
                            matchers_mod.IdRuleMatcher(sig[0], sig[1], sig[2]))
            else:
                matchers.append(matcher)

    if len(id_set_matcher.sids) > 0:
        matchers.append(id_set_matcher)

    return matchers


def load_matchers(filename):
    with open(filename) as fileobj:
        return parse_matchers(fileobj)

def load_local(local, files):

    """Load local files into the files dict."""
    if os.path.isdir(local):
        for dirpath, dirnames, filenames in os.walk(local):
            for filename in filenames:
                if filename.endswith(".rules"):
                    path = os.path.join(local, filename)
                    load_local(path, files)
    else:
        local_files = glob.glob(local)
        if len(local_files) == 0:
            local_files.append(local)
        for filename in local_files:
            filename = os.path.realpath(filename)
            logger.info("Loading local file %s" % (filename))
            if filename in files:
                logger.warn(
                    "Local file %s overrides existing file of same name." % (
                        filename))
            try:
                with open(filename, "rb") as fileobj:
                    files.append(SourceFile(filename, fileobj.read()))
            except Exception as err:
                logger.error("Failed to open {}: {}".format(filename, err))

def load_dist_rules(files):
    """Load the rule files provided by the Suricata distribution."""

    # In the future hopefully we can just pull in all files from
    # /usr/share/suricata/rules, but for now pull in the set of files
    # known to have been provided by the Suricata source.
    filenames = [
        "app-layer-events.rules",
        "decoder-events.rules",
        "dhcp-events.rules",
        "dnp3-events.rules",
        "dns-events.rules",
        "files.rules",
        "http2-events.rules",
        "http-events.rules",
        "ipsec-events.rules",
        "kerberos-events.rules",
        "modbus-events.rules",
        "mqtt-events.rules",
        "nfs-events.rules",
        "ntp-events.rules",
        "quic-events.rules",
        "rfb-events.rules",
        "smb-events.rules",
        "smtp-events.rules",
        "ssh-events.rules",
        "stream-events.rules",
        "tls-events.rules",
    ]

    dist_rule_path = config.get(config.DIST_RULE_DIRECTORY_KEY)
    if not dist_rule_path:
        logger.warning("No distribution rule directory found.")
        return

    if not os.path.exists(dist_rule_path):
        logger.warning("Distribution rule directory not found: %s",
                       dist_rule_path)
        return

    if os.path.exists(dist_rule_path):
        if not os.access(dist_rule_path, os.R_OK):
            logger.warning("Distribution rule path not readable: %s",
                           dist_rule_path)
            return
        for filename in filenames:
            path = os.path.join(dist_rule_path, filename)
            if not os.path.exists(path):
                continue
            if not os.access(path, os.R_OK):
                logger.warning("Distribution rule file not readable: %s",
                               path)
                continue
            logger.info("Loading distribution rule file %s", path)
            try:
                with open(path, "rb") as fileobj:
                    files.append(SourceFile(path, fileobj.read()))
            except Exception as err:
                logger.error("Failed to open {}: {}".format(path, err))
                sys.exit(1)

def load_classification(suriconf, files):
    filename = os.path.join("suricata", "classification.config")
    dirs = []
    classification_dict = {}
    if "sysconfdir" in suriconf.build_info:
        dirs.append(os.path.join(suriconf.build_info["sysconfdir"], filename))
    if "datarootdir" in suriconf.build_info:
        dirs.append(os.path.join(suriconf.build_info["datarootdir"], filename))

    for path in dirs:
        if os.path.exists(path):
            logger.debug("Loading {}".format(path))
            with open(path) as fp:
                for line in fp:
                    if line.startswith("#") or not line.strip():
                        continue
                    config_classification = line.split(":")[1].strip()
                    key, desc, priority = config_classification.split(",")
                    if key in classification_dict:
                        if classification_dict[key][1] >= priority:
                            continue
                    classification_dict[key] = [desc, priority, line.strip()]

    # Handle files from the sources
    for filep in files:
        logger.debug("Loading {}".format(filep[0]))
        lines = filep[1].decode().split('\n')
        for line in lines:
            if line.startswith("#") or not line.strip():
                continue
            config_classification = line.split(":")[1].strip()
            key, desc, priority = config_classification.split(",")
            if key in classification_dict:
                if classification_dict[key][1] >= priority:
                    if classification_dict[key][1] > priority:
                        logger.warning("Found classification with same shortname \"{}\","
                                       " keeping the one with higher priority ({})".format(
                                       key, classification_dict[key][1]))
                    continue
            classification_dict[key] = [desc, priority, line.strip()]

    return classification_dict

def manage_classification(suriconf, files):
    if suriconf is None:
        # Can't continue without a valid Suricata configuration
        # object.
        return
    classification_dict = load_classification(suriconf, files)
    path = os.path.join(config.get_output_dir(), "classification.config")
    try:
        logger.info("Writing {}".format(path))
        with open(path, "w+") as fp:
            fp.writelines("{}\n".format(v[2]) for k, v in classification_dict.items())
    except (OSError, IOError) as err:
        logger.error(err)

def handle_dataset_files(rule, dep_files):
    if not rule.enabled:
        return
    dataset_load = [el for el in (el.strip() for el in rule.dataset.split(",")) if el.startswith("load")]
    if not dataset_load:
        # No dataset load found.
        return
    dataset_filename = dataset_load[0].split(maxsplit=1)[1].strip()

    # Get the directory name the rule is from.
    prefix = os.path.dirname(rule.group)

    # Construct the source filename.
    source_filename = os.path.join(prefix, dataset_filename)

    # If a source filename starts with a "/", look for it on the filesystem. The archive
    # unpackers will take care of removing a leading / so this shouldn't happen for
    # downloaded rulesets.
    if source_filename.startswith("/"):
        if not os.path.exists(source_filename):
            logger.warn("Local dataset file '{}' was not found for rule {}, rule will be disabled".format(source_filename, rule.idstr))
            rule.enabled = False
            return
        dataset_contents = open(source_filename, "rb").read()
    else:
        if not source_filename in dep_files:
            logger.warn("Dataset file '{}' was not found for rule {}, rule will be disabled".format(dataset_filename, rule.idstr))
            rule.enabled = False
            return
        dataset_contents = dep_files[source_filename]

    source_filename_hash = util.md5_hexdigest(source_filename.encode())
    new_rule = re.sub(r"(dataset.*?load\s+){}".format(dataset_filename), r"\g<1>datasets/{}".format(source_filename_hash), rule.format())
    dest_filename = os.path.join(config.get_output_dir(), "datasets", source_filename_hash)
    dest_dir = os.path.dirname(dest_filename)
    logger.debug("Copying dataset file {} to {}".format(dataset_filename, dest_filename))
    try:
        os.makedirs(dest_dir, exist_ok=True)
    except Exception as err:
        logger.error("Failed to create directory {}: {}".format(dest_dir, err))
        return
    with open(dest_filename, "w") as fp:
        fp.write(dataset_contents.decode("utf-8"))
    return new_rule

def is_path_in_directory(filename, directory):
    relpath = os.path.relpath(filename, directory)
    return relpath == os.curdir or (
        relpath != os.pardir and
        not relpath.startswith(os.pardir + os.sep))

def handle_embedded_file(rule, dep_files, kw):
    if not rule.enabled:
        return
    embedded_filename = rule.get(kw)

    # Get the directory name the rule is from.
    prefix = os.path.dirname(rule.group)

    source_filename = os.path.join(prefix, embedded_filename)
    dest_filename = source_filename[len(prefix) + len(os.path.sep):]
    logger.debug("dest_filename={}".format(dest_filename))

    if source_filename not in dep_files:
        logger.error("{} file {} was not found".format(kw, embedded_filename))
    else:
        logger.debug("Copying %s file %s to output directory" % (kw, embedded_filename))
        filepath = os.path.join(config.get_output_dir(), os.path.dirname(dest_filename))
        logger.debug("filepath: %s" % filepath)
        output_filename = os.path.join(filepath, os.path.basename(embedded_filename))
        logger.debug("output fname: %s" % output_filename)

        # Refuse to write out source files that would land outside
        # of the rule data directory (traversal attacks, etc).
        #
        # Also disable the rule.
        output_dir = os.path.realpath(config.get_output_dir())
        real_output_filename = os.path.realpath(output_filename)
        if not is_path_in_directory(real_output_filename, output_dir):
            logger.warning(
                "Refusing to write embedded %s file outside output directory "
                    "%s: %s (rule: %s). Rule will be disabled." % (
                    kw, output_dir, real_output_filename, rule.brief()))
            rule.enabled = False
            return

        try:
            os.makedirs(filepath)
        except OSError as oserr:
            if oserr.errno != errno.EEXIST:
                logger.error(oserr)
                sys.exit(1)
        with open(output_filename, "w") as fp:
            fp.write(dep_files[source_filename].decode("utf-8"))

def write_merged(filename, rulemap, dep_files):

    if not args.quiet:
        # List of rule IDs that have been added.
        added = []
        # List of rule objects that have been removed.
        removed = []
        # List of rule IDs that have been modified.
        modified = []

        oldset = {}
        if os.path.exists(filename):
            for rule in rule_mod.parse_file(filename):
                oldset[rule.id] = True
                if not rule.id in rulemap:
                    removed.append(rule)
                elif rule.format() != rulemap[rule.id].format():
                    modified.append(rulemap[rule.id])

        for key in rulemap:
            if not key in oldset:
                added.append(key)

        enabled = len([rule for rule in rulemap.values() if rule.enabled])
        logger.info("Writing rules to %s: total: %d; enabled: %d; "
                    "added: %d; removed %d; modified: %d" % (
                        filename,
                        len(rulemap),
                        enabled,
                        len(added),
                        len(removed),
                        len(modified)))
    tmp_filename = ".".join([filename, "tmp"])
    with io.open(tmp_filename, encoding="utf-8", mode="w") as fileobj:
        for sid in rulemap:
            rule = rulemap[sid]
            reformatted = None
            for kw in file_kw:
                if kw in rule:
                    if "dataset" == kw:
                        reformatted = handle_dataset_files(rule, dep_files)
                    else:
                        handle_embedded_file(rule, dep_files, kw)
            if reformatted:
                print(reformatted, file=fileobj)
            else:
                print(rule.format(), file=fileobj)
    os.rename(tmp_filename, filename)

def write_to_directory(directory, files, rulemap, dep_files):
    # List of rule IDs that have been added.
    added = []
    # List of rule objects that have been removed.
    removed = []
    # List of rule IDs that have been modified.
    modified = []

    oldset = {}
    if not args.quiet:
        for file in files:
            outpath = os.path.join(
                directory, os.path.basename(file.filename))

            if os.path.exists(outpath):
                for rule in rule_mod.parse_file(outpath):
                    oldset[rule.id] = True
                    if not rule.id in rulemap:
                        removed.append(rule)
                    elif rule.format() != rulemap[rule.id].format():
                        modified.append(rule.id)
        for key in rulemap:
            if not key in oldset:
                added.append(key)

        enabled = len([rule for rule in rulemap.values() if rule.enabled])
        logger.info("Writing rule files to directory %s: total: %d; "
                    "enabled: %d; added: %d; removed %d; modified: %d" % (
                        directory,
                        len(rulemap),
                        enabled,
                        len(added),
                        len(removed),
                        len(modified)))

    for file in sorted(files):
        outpath = os.path.join(
            directory, os.path.basename(file.filename))
        logger.debug("Writing %s." % outpath)
        if not file.filename.endswith(".rules"):
            open(outpath, "wb").write(file.content)
        else:
            content = []
            for line in io.StringIO(file.content.decode("utf-8")):
                rule = rule_mod.parse(line)
                if not rule or rule.id not in rulemap:
                    content.append(line.strip())
                else:
                    reformatted = None
                    for kw in file_kw:
                        if kw in rule:
                            if "dataset" == kw:
                                reformatted = handle_dataset_files(rulemap[rule.id], dep_files)
                            else:
                                handle_embedded_file(rulemap[rule.id], dep_files, kw)
                    if reformatted:
                        content.append(reformatted)
                    else:
                        content.append(rulemap[rule.id].format())
            tmp_filename = ".".join([outpath, "tmp"])
            io.open(tmp_filename, encoding="utf-8", mode="w").write(
                u"\n".join(content))
            os.rename(tmp_filename, outpath)

def write_yaml_fragment(filename, files):
    logger.info(
        "Writing YAML configuration fragment: %s" % (filename))
    with open(filename, "w") as fileobj:
        print("%YAML 1.1", file=fileobj)
        print("---", file=fileobj)
        print("rule-files:", file=fileobj)
        for fn in sorted(files):
            if fn.endswith(".rules"):
                print("  - %s" % os.path.basename(fn), file=fileobj)

def write_sid_msg_map(filename, rulemap, version=1):
    logger.info("Writing %s." % (filename))
    with io.open(filename, encoding="utf-8", mode="w") as fileobj:
        for key in rulemap:
            rule = rulemap[key]
            if version == 2:
                formatted = rule_mod.format_sidmsgmap_v2(rule)
                if formatted:
                    print(formatted, file=fileobj)
            else:
                formatted = rule_mod.format_sidmsgmap(rule)
                if formatted:
                    print(formatted, file=fileobj)

def build_rule_map(rules):
    """Turn a list of rules into a mapping of rules.

    In case of gid:sid conflict, the rule with the higher revision
    number will be used.
    """
    rulemap = {}

    for rule in rules:
        if rule.id not in rulemap:
            rulemap[rule.id] = rule
        else:
            if rule["rev"] == rulemap[rule.id]["rev"]:
                logger.warning(
                    "Found duplicate rule SID {} with same revision, "
                    "keeping the first rule seen.".format(rule.sid))
            if rule["rev"] > rulemap[rule.id]["rev"]:
                logger.warning(
                    "Found duplicate rule SID {}, "
                    "keeping the rule with greater revision.".format(rule.sid))
                rulemap[rule.id] = rule

    return rulemap

def dump_sample_configs():

    for filename in configs.filenames:
        if os.path.exists(filename):
            logger.info("File already exists, not dumping %s." % (filename))
        else:
            logger.info("Creating %s." % (filename))
            shutil.copy(os.path.join(configs.directory, filename), filename)

def resolve_flowbits(rulemap, disabled_rules):
    flowbit_resolver = rule_mod.FlowbitResolver()
    flowbit_enabled = set()
    pass_ = 1
    while True:
        logger.debug("Checking flowbits for pass %d of rules.", pass_)
        flowbits = flowbit_resolver.get_required_flowbits(rulemap)
        logger.debug("Found %d required flowbits.", len(flowbits))
        required_rules = flowbit_resolver.get_required_rules(rulemap, flowbits)
        logger.debug(
            "Found %d rules to enable for flowbit requirements (pass %d)",
            len(required_rules), pass_)
        if not required_rules:
            logger.debug("All required rules enabled.")
            break
        for rule in required_rules:
            if not rule.enabled and rule in disabled_rules:
                logger.debug(
                    "Enabling previously disabled rule for flowbits: %s" % (
                        rule.brief()))
            rule.enabled = True
            rule.noalert = True
            flowbit_enabled.add(rule)
        pass_ = pass_ + 1
    logger.info("Enabled %d rules for flowbit dependencies." % (
        len(flowbit_enabled)))

class ThresholdProcessor:

    patterns = [
        re.compile(r"\s+(re:\"(.*)\")"),
        re.compile(r"\s+(re:(.*?)),.*"),
        re.compile(r"\s+(re:(.*))"),
    ]

    def extract_regex(self, buf):
        for pattern in self.patterns:
            m = pattern.search(buf)
            if m:
                return m.group(2)

    def extract_pattern(self, buf):
        regex = self.extract_regex(buf)
        if regex:
            return re.compile(regex, re.I)

    def replace(self, threshold, rule):
        for pattern in self.patterns:
            m = pattern.search(threshold)
            if m:
                return threshold.replace(
                    m.group(1), "gen_id %d, sig_id %d" % (rule.gid, rule.sid))
        return threshold

    def process(self, filein, fileout, rulemap):
        count = 0
        for line in filein:
            line = line.rstrip()
            if not line or line.startswith("#"):
                print(line, file=fileout)
                continue
            pattern = self.extract_pattern(line)
            if not pattern:
                print(line, file=fileout)
            else:
                for rule in rulemap.values():
                    if rule.enabled:
                        if pattern.search(rule.format()):
                            count += 1
                            print("# %s" % (rule.brief()), file=fileout)
                            print(self.replace(line, rule), file=fileout)
                            print("", file=fileout)
        logger.info("Generated %d thresholds to %s." % (count, fileout.name))

class FileTracker:
    """Used to check if files are modified.

    Usage: Add files with add(filename) prior to modification. Test
    with any_modified() which will return True if any of the checksums
    have been modified.

    """

    def __init__(self):
        self.hashes = {}

    def add(self, filename):
        checksum = self.md5(filename)
        if not checksum:
            logger.debug("Recording new file %s" % (filename))
        else:
            logger.debug("Recording existing file %s with hash '%s'.",
                filename, checksum)
        self.hashes[filename] = checksum

    def md5(self, filename):
        if not os.path.exists(filename):
            return ""
        else:
            return util.md5_hexdigest(open(filename, "rb").read())

    def any_modified(self):
        for filename in self.hashes:
            if self.md5(filename) != self.hashes[filename]:
                return True
        return False

def ignore_file(ignore_files, filename):
    if not ignore_files:
        return False
    for pattern in ignore_files:
        if fnmatch.fnmatch(os.path.basename(filename), pattern):
            return True
    return False

def check_vars(suriconf, rulemap):
    """Check that all vars referenced by a rule exist. If a var is not
    found, disable the rule.
    """
    if suriconf is None:
        # Can't continue without a valid Suricata configuration
        # object.
        return
    for rule_id in rulemap:
        rule = rulemap[rule_id]
        disable = False
        for var in rule_mod.parse_var_names(rule["source_addr"]):
            if not suriconf.has_key("vars.address-groups.%s" % (var)):
                logger.warning(
                    "Rule has unknown source address var and will be disabled: %s: %s" % (
                        var, rule.brief()))
                notes.address_group_vars.add(var)
                disable = True
        for var in rule_mod.parse_var_names(rule["dest_addr"]):
            if not suriconf.has_key("vars.address-groups.%s" % (var)):
                logger.warning(
                    "Rule has unknown dest address var and will be disabled: %s: %s" % (
                        var, rule.brief()))
                notes.address_group_vars.add(var)
                disable = True
        for var in rule_mod.parse_var_names(rule["source_port"]):
            if not suriconf.has_key("vars.port-groups.%s" % (var)):
                logger.warning(
                    "Rule has unknown source port var and will be disabled: %s: %s" % (
                        var, rule.brief()))
                notes.port_group_vars.add(var)
                disable = True
        for var in rule_mod.parse_var_names(rule["dest_port"]):
            if not suriconf.has_key("vars.port-groups.%s" % (var)):
                logger.warning(
                    "Rule has unknown dest port var and will be disabled: %s: %s" % (
                        var, rule.brief()))
                notes.port_group_vars.add(var)
                disable = True

        if disable:
            rule.enabled = False

def test_suricata(suricata_path):
    if not suricata_path:
        logger.info("No suricata application binary found, skipping test.")
        return True

    if config.get("no-test"):
        logger.info("Skipping test, disabled by configuration.")
        return True

    if config.get("test-command"):
        test_command = config.get("test-command")
        logger.info("Testing Suricata configuration with: %s" % (
            test_command))
        env = {
            "SURICATA_PATH": suricata_path,
            "OUTPUT_DIR": config.get_output_dir(),
        }
        if not config.get("no-merge"):
            env["OUTPUT_FILENAME"] = os.path.join(
                config.get_output_dir(), DEFAULT_OUTPUT_RULE_FILENAME)
        rc = subprocess.Popen(test_command, shell=True, env=env).wait()
        if rc != 0:
            return False
    else:
        logger.info("Testing with suricata -T.")
        suricata_conf = config.get("suricata-conf")
        if not config.get("no-merge"):
            if not engine.test_configuration(
                    suricata_path, suricata_conf,
                    os.path.join(
                        config.get_output_dir(),
                        DEFAULT_OUTPUT_RULE_FILENAME)):
                return False
        else:
            if not engine.test_configuration(suricata_path, suricata_conf):
                return False

    return True

def copytree(src, dst):
    """A shutil.copytree like function that will copy the files from one
    tree to another even if the path exists.

    """

    for dirpath, dirnames, filenames in os.walk(src):
        for filename in filenames:
            src_path = os.path.join(dirpath, filename)
            dst_path = os.path.join(dst, src_path[len(src) + 1:])
            if not os.path.exists(os.path.dirname(dst_path)):
                os.makedirs(os.path.dirname(dst_path), mode=0o770)
            shutil.copyfile(src_path, dst_path)

            # Also attempt to copy the stat bits, but this may fail
            # if the owner of the file is not the same as the user
            # running the program.
            try:
                shutil.copystat(src_path, dst_path)
            except OSError as err:
                logger.debug(
                    "Failed to copy stat info from %s to %s", src_path,
                    dst_path)

def load_sources(suricata_version):
    urls = []

    http_header = None
    checksum = True

    # Add any URLs added with the --url command line parameter.
    if config.args().url:
        for url in config.args().url:
            urls.append((url, http_header, checksum))

    # Get the new style sources.
    enabled_sources = sources.get_enabled_sources()

    # Convert the Suricata version to a version string.
    version_string = "%d.%d.%d" % (
        suricata_version.major, suricata_version.minor,
        suricata_version.patch)

    # Construct the URL replacement parameters that are internal to
    # suricata-update.
    internal_params = {"__version__": version_string}

    # If we have new sources, we also need to load the index.
    if enabled_sources:
        index_filename = sources.get_index_filename()
        if not os.path.exists(index_filename):
            logger.warning("No index exists, will use bundled index.")
            logger.warning("Please run suricata-update update-sources.")
        if os.path.exists(index_filename) and time.time() - \
                os.stat(index_filename).st_mtime > INDEX_EXPIRATION_TIME:
            logger.warning(
                "Source index is older than 2 weeks. "
                "Please update with suricata-update update-sources.")
        index = sources.Index(index_filename)

        for (name, source) in enabled_sources.items():
            params = source["params"] if "params" in source else {}
            params.update(internal_params)
            if "url" in source:
                # No need to go off to the index.
                http_header = source.get("http-header")
                checksum = source.get("checksum")
                url = (source["url"] % params, http_header, checksum)
                logger.debug("Resolved source %s to URL %s.", name, url[0])
            else:
                if not index:
                    raise exceptions.ApplicationError(
                        "Source index is required for source %s; "
                        "run suricata-update update-sources" % (source["source"]))
                source_config = index.get_source_by_name(name)
                if source_config is None:
                    logger.warn("Source no longer exists in index and will not be fetched: {}".format(name))
                    continue
                try:
                    checksum = source_config["checksum"]
                except:
                    checksum = True
                url = (index.resolve_url(name, params), http_header,
                       checksum)
                if "deprecated" in source_config:
                    logger.warn("Source has been deprecated: %s: %s" % (
                        name, source_config["deprecated"]))
                if "obsolete" in source_config:
                    logger.warn("Source is obsolete and will not be fetched: %s: %s" % (
                        name, source_config["obsolete"]))
                    continue
                logger.debug("Resolved source %s to URL %s.", name, url[0])
            urls.append(url)

    if config.get("sources"):
        for url in config.get("sources"):
            if not isinstance(url, str):
                raise exceptions.InvalidConfigurationError(
                    "Invalid datatype for source URL: %s" % (str(url)))
            url = (url % internal_params, http_header, checksum)
            logger.debug("Adding source %s.", url)
            urls.append(url)

    # If --etopen is on the command line, make sure its added. Or if
    # there are no URLs, default to ET/Open.
    if config.get("etopen") or not urls:
        if not config.args().offline and not urls:
            logger.info("No sources configured, will use Emerging Threats Open")
        urls.append((sources.get_etopen_url(internal_params), http_header,
                     checksum))

    # Converting the URLs to a set removed dupes.
    urls = set(urls)

    # Now download each URL.
    files = []
    for url in urls:

        # To de-duplicate filenames, add a prefix that is a hash of the URL.
        prefix = util.md5_hexdigest(url[0].encode())
        source_files = Fetch().run(url)
        for key in source_files:
            content = source_files[key]
            key = os.path.join(prefix, key)
            files.append(SourceFile(key, content))

    # Now load local rules.
    if config.get("local") is not None:
        for local in config.get("local"):
            load_local(local, files)

    return files

def copytree_ignore_backup(src, names):
    """ Returns files to ignore when doing a backup of the rules. """
    return [".cache"]

def check_output_directory(output_dir):
    """ Check that the output directory exists, creating it if it doesn't. """
    if not os.path.exists(output_dir):
        logger.info("Creating directory %s." % (output_dir))
        try:
            os.makedirs(output_dir, mode=0o770)
        except Exception as err:
            raise exceptions.ApplicationError(
                "Failed to create directory %s: %s" % (
                    output_dir, err))

# Check and disable ja3 rules if needed.
#
# Note: This is a bit of a quick fixup job for 5.0, but we should look
# at making feature handling more generic.
def disable_ja3(suriconf, rulemap, disabled_rules):
    if suriconf and suriconf.build_info:
        enabled = False
        reason = None
        logged = False
        if "HAVE_NSS" not in suriconf.build_info["features"]:
            reason = "Disabling ja3 rules as Suricata is built without libnss."
        else:
            # Check if disabled. Must be explicitly disabled,
            # otherwise we'll keep ja3 rules enabled.
            val = suriconf.get("app-layer.protocols.tls.ja3-fingerprints")

            # Prior to Suricata 5, leaving ja3-fingerprints undefined
            # in the configuration disabled the feature. With 5.0,
            # having it undefined will enable it as needed.
            if not val:
                if suriconf.build_info["version"].major < 5:
                    val = "no"
                else:
                    val = "auto"

            if val and val.lower() not in ["1", "yes", "true", "auto"]:
                reason = "Disabling ja3 rules as ja3 fingerprints are not enabled."
            else:
                enabled = True

        count = 0
        if not enabled:
            for key, rule in rulemap.items():
                if "ja3" in rule["features"]:
                    if not logged:
                        logger.warn(reason)
                        logged = True
                    rule.enabled = False
                    disabled_rules.append(rule)
                    count += 1
            if count:
                logger.info("%d ja3_hash rules disabled." % (count))

def _main():
    global args
    args = parsers.parse_arg()

    # Go verbose or quiet sooner than later.
    if args.verbose:
        logger.setLevel(logging.DEBUG)
    if args.quiet:
        logger.setLevel(logging.WARNING)

    logger.debug("This is suricata-update version %s (rev: %s); Python: %s" % (
        version, revision, sys.version.replace("\n", "- ")))

    config.init(args)
    
    # Error out if any reserved/unimplemented arguments were set.
    unimplemented_args = [
        "disable",
        "enable",
        "modify",
        "drop",
    ]
    for arg in unimplemented_args:
        if hasattr(args, arg) and getattr(args, arg):
            logger.error("--{} not implemented".format(arg))
            return 1

    suricata_path = config.get("suricata")

    # Now parse the Suricata version. If provided on the command line,
    # use that, otherwise attempt to get it from Suricata.
    if args.suricata_version:
        # The Suricata version was passed on the command line, parse it.
        suricata_version = engine.parse_version(args.suricata_version)
        if not suricata_version:
            logger.error("Failed to parse provided Suricata version: {}".format(
                args.suricata_version))
            return 1
        logger.info("Forcing Suricata version to %s." % (suricata_version.full))
    elif suricata_path:
        suricata_version = engine.get_version(suricata_path)
        if suricata_version:
            logger.info("Found Suricata version %s at %s." % (
                str(suricata_version.full), suricata_path))
        else:
            logger.error("Failed to get Suricata version.")
            return 1
    else:
        logger.info(
            "Using default Suricata version of %s", DEFAULT_SURICATA_VERSION)
        suricata_version = engine.parse_version(DEFAULT_SURICATA_VERSION)

    # Provide the Suricata version to the net module to add to the
    # User-Agent.
    net.set_user_agent_suricata_version(suricata_version.full)

    if args.subcommand:
        if args.subcommand == "check-versions" and hasattr(args, "func"):
            return args.func(suricata_version)
        elif hasattr(args, "func"):
            return args.func()
        elif args.subcommand != "update":
            logger.error("Unknown command: {}".format(args.subcommand))
            return 1

    if args.dump_sample_configs:
        return dump_sample_configs()

    # If --no-ignore was provided, clear any ignores provided in the
    # config.
    if args.no_ignore:
        config.set(config.IGNORE_KEY, [])

    file_tracker = FileTracker()

    disable_matchers = []
    enable_matchers = []
    modify_filters = []
    drop_filters = []

    # Load user provided disable filters.
    disable_conf_filename = config.get("disable-conf")
    if disable_conf_filename:
        if os.path.exists(disable_conf_filename):
            logger.info("Loading %s.", disable_conf_filename)
            disable_matchers += load_matchers(disable_conf_filename)
        else:
            logger.warn("disable-conf file does not exist: {}".format(disable_conf_filename))

    # Load user provided enable filters.
    enable_conf_filename = config.get("enable-conf")
    if enable_conf_filename:
        if os.path.exists(enable_conf_filename):
            logger.info("Loading %s.", enable_conf_filename)
            enable_matchers += load_matchers(enable_conf_filename)
        else:
            logger.warn("enable-conf file does not exist: {}".format(enable_conf_filename))

    # Load user provided modify filters.
    modify_conf_filename = config.get("modify-conf")
    if modify_conf_filename:
        if os.path.exists(modify_conf_filename):
            logger.info("Loading %s.", modify_conf_filename)
            modify_filters += load_filters(modify_conf_filename)
        else:
            logger.warn("modify-conf file does not exist: {}".format(modify_conf_filename))

    # Load user provided drop filters.
    drop_conf_filename = config.get("drop-conf")
    if drop_conf_filename:
        if os.path.exists(drop_conf_filename):
            logger.info("Loading %s.", drop_conf_filename)
            drop_filters += load_drop_filters(drop_conf_filename)
        else:
            logger.warn("drop-conf file does not exist: {}".format(drop_conf_filename))

    # Load the Suricata configuration if we can.
    suriconf = None
    if config.get("suricata-conf") and \
       os.path.exists(config.get("suricata-conf")) and \
       suricata_path and os.path.exists(suricata_path):
        logger.info("Loading %s",config.get("suricata-conf"))
        try:
            suriconf = engine.Configuration.load(
                config.get("suricata-conf"), suricata_path=suricata_path)
        except subprocess.CalledProcessError:
            return 1

    # Disable rule that are for app-layers that are not enabled.
    if suriconf:
        for key in suriconf.keys():
            m = re.match(r"app-layer\.protocols\.([^\.]+)\.enabled", key)
            if m:
                proto = m.group(1)
                if not suriconf.is_true(key, ["detection-only"]):
                    logger.info("Disabling rules for protocol %s", proto)
                    disable_matchers.append(matchers_mod.ProtoRuleMatcher(proto))
                elif proto == "smb" and suriconf.build_info:
                    # Special case for SMB rules. For versions less
                    # than 5, disable smb rules if Rust is not
                    # available.
                    if suriconf.build_info["version"].major < 5:
                        if not "RUST" in suriconf.build_info["features"]:
                            logger.info("Disabling rules for protocol {}".format(proto))
                            disable_matchers.append(matchers_mod.ProtoRuleMatcher(proto))

    # Check that the cache directory exists and is writable.
    if not os.path.exists(config.get_cache_dir()):
        try:
            os.makedirs(config.get_cache_dir(), mode=0o770)
        except Exception as err:
            logger.warning(
                "Cache directory does not exist and could not be created. "
                "/var/tmp will be used instead.")
            config.set_cache_dir("/var/tmp")

    files = load_sources(suricata_version)

    load_dist_rules(files)

    rules = []
    classification_files = []
    dep_files = {}
    for entry in sorted(files, key = lambda e: e.filename):
        if "classification.config" in entry.filename:
            classification_files.append((entry.filename, entry.content))
            continue
        if not entry.filename.endswith(".rules"):
            dep_files.update({entry.filename: entry.content})
            continue
        if ignore_file(config.get("ignore"), entry.filename):
            logger.info("Ignoring file {}".format(entry.filename))
            continue
        logger.debug("Parsing {}".format(entry.filename))
        rules += rule_mod.parse_fileobj(io.BytesIO(entry.content), entry.filename)

    rulemap = build_rule_map(rules)
    logger.info("Loaded %d rules." % (len(rules)))

    # Counts of user enabled and modified rules.
    enable_count = 0
    modify_count = 0
    drop_count = 0

    # List of rules disabled by user. Used for counting, and to log
    # rules that are re-enabled to meet flowbit requirements.
    disabled_rules = []

    for key, rule in rulemap.items():

        # To avoid duplicate counts when a rule has more than one modification
        # to it, we track the actions here then update the counts at the end.
        enabled = False
        modified = False
        dropped = False

        for matcher in disable_matchers:
            if rule.enabled and matcher.match(rule):
                logger.debug("Disabling: %s" % (rule.brief()))
                rule.enabled = False
                disabled_rules.append(rule)

        for matcher in enable_matchers:
            if not rule.enabled and matcher.match(rule):
                logger.debug("Enabling: %s" % (rule.brief()))
                rule.enabled = True
                enabled = True

        for fltr in drop_filters:
            if fltr.match(rule):
                rule = fltr.run(rule)
                dropped = True

        for fltr in modify_filters:
            if fltr.match(rule):
                new_rule = fltr.run(rule)
                if new_rule != rule:
                    rule = new_rule
                    modified = True

        if enabled:
            enable_count += 1
        if modified:
            modify_count += 1
        if dropped:
            drop_count += 1

        rulemap[key] = rule

    # Check if we should disable ja3 rules.
    try:
        disable_ja3(suriconf, rulemap, disabled_rules)
    except Exception as err:
        logger.error("Failed to dynamically disable ja3 rules: {}".format(err))

    # Check rule vars, disabling rules that use unknown vars.
    check_vars(suriconf, rulemap)

    logger.info("Disabled %d rules." % (len(disabled_rules)))
    logger.info("Enabled %d rules." % (enable_count))
    logger.info("Modified %d rules." % (modify_count))
    logger.info("Dropped %d rules." % (drop_count))

    # Fixup flowbits.
    resolve_flowbits(rulemap, disabled_rules)

    # Check that output directory exists, creating it if needed.
    check_output_directory(config.get_output_dir())

    # Check that output directory is writable.
    if not os.access(config.get_output_dir(), os.W_OK):
        logger.error(
            "Output directory is not writable: {}".format(config.get_output_dir()))
        return 1

    # Backup the output directory.
    logger.info("Backing up current rules.")
    backup_directory = util.mktempdir()
    shutil.copytree(config.get_output_dir(), os.path.join(
        backup_directory, "backup"), ignore=copytree_ignore_backup)

    if not args.no_merge:
        # The default, write out a merged file.
        output_filename = os.path.join(
            config.get_output_dir(), DEFAULT_OUTPUT_RULE_FILENAME)
        file_tracker.add(output_filename)
        write_merged(os.path.join(output_filename), rulemap, dep_files)
    else:
        for file in files:
            file_tracker.add(
                os.path.join(
                    config.get_output_dir(), os.path.basename(file.filename)))
        write_to_directory(config.get_output_dir(), files, rulemap, dep_files)

    manage_classification(suriconf, classification_files)

    if args.yaml_fragment:
        file_tracker.add(args.yaml_fragment)
        write_yaml_fragment(args.yaml_fragment, files)

    if args.sid_msg_map:
        write_sid_msg_map(args.sid_msg_map, rulemap, version=1)
    if args.sid_msg_map_2:
        write_sid_msg_map(args.sid_msg_map_2, rulemap, version=2)

    if args.threshold_in and args.threshold_out:
        file_tracker.add(args.threshold_out)
        threshold_processor = ThresholdProcessor()
        threshold_processor.process(
            open(args.threshold_in), open(args.threshold_out, "w"), rulemap)

    if not args.force and not file_tracker.any_modified():
        logger.info("No changes detected, exiting.")
        notes.dump_notes()
        return 0

    # Set these containers to None to fee the memory before testing Suricata which
    # may consume a lot of memory by itself. Ideally we should refactor this large
    # function into multiple methods so these go out of scope and get removed
    # automatically.
    rulemap = None
    rules = None
    files = None

    if not test_suricata(suricata_path):
        logger.error("Suricata test failed, aborting.")
        logger.error("Restoring previous rules.")
        copytree(
            os.path.join(backup_directory, "backup"), config.get_output_dir())
        return 1

    if not config.args().no_reload and config.get("reload-command"):
        reload_command = config.get("reload-command")
        logger.info("Running {}.".format(reload_command))
        try:
            output = subprocess.check_output(
                reload_command, shell=True, stderr=subprocess.STDOUT)
            if reload_command.find("suricatasc") > -1 and output.decode("utf-8").find("NOK") > -1:
                logger.error("Reload command was not successful: {}".format(output))
            else:
                logger.info("Reload command returned: {}".format(output.decode("utf-8")))
        except Exception as err:
            logger.error("Reload command failed: {}".format(
                getattr(err, 'output', str(err))))

    logger.info("Done.")

    notes.dump_notes()

    return 0

def signal_handler(signal, frame):
    print('Program interrupted. Aborting...')
    sys.exit(1)

def main():
    signal.signal(signal.SIGINT, signal_handler)
    try:
        sys.exit(_main())
    except exceptions.ApplicationError as err:
        logger.error(err)
    sys.exit(1)

if __name__ == "__main__":
    main()
