bio.h File Reference

Cross platform binary IO to process files in sphinx3 format. More...

`#include <stdio.h>`
`#include <stdarg.h>`
`#include <sphinxbase/sphinxbase_export.h>`
`#include <sphinxbase/prim_type.h>`
`#include <sphinxbase/byteorder.h>`

Go to the source code of this file.

## Macros

#define | BYTE_ORDER_MAGIC (0x11223344)
#define | REVERSE_SENSE_SWAP_INT16(x)
| "reversed senses" SWAP, ARCHAN: This is still incorporated in Sphinx 3 because lm3g2dmp used it. More...
#define | REVERSE_SENSE_SWAP_INT32(x)

## Functions

SPHINXBASE_EXPORT int32 | bio_readhdr (FILE *fp, char ***name, char ***val, int32 *swap)
| Read binary file format header: has the following format. More...
SPHINXBASE_EXPORT int32 | bio_writehdr_version (FILE *fp, char *version)
| Write a simple binary file header, containing only the version string. More...
SPHINXBASE_EXPORT int32 | bio_writehdr (FILE *fp,...)
SPHINXBASE_EXPORT void | bio_hdrarg_free (char **name, char **val)
| Free name and value strings previously allocated and returned by bio_readhdr. More...
SPHINXBASE_EXPORT int32 | bio_fread (void *buf, int32 el_sz, int32 n_el, FILE *fp, int32 swap, uint32 *chksum)
| Like fread but perform byteswapping and accumulate checksum (the 2 extra arguments). More...
SPHINXBASE_EXPORT int32 | bio_fwrite (void *buf, int32 el_sz, int32 n_el, FILE *fp, int32 swap, uint32 *chksum)
| Like fwrite but perform byteswapping and accumulate checksum (the 2 extra arguments). More...
SPHINXBASE_EXPORT int32 | bio_fread_1d (void **buf, size_t el_sz, uint32 *n_el, FILE *fp, int32 sw, uint32 *ck)
| Read a 1-d array (fashioned after fread): More...
SPHINXBASE_EXPORT int32 | bio_fread_2d (void ***arr, size_t e_sz, uint32 *d1, uint32 *d2, FILE *fp, uint32 swap, uint32 *chksum)
| Read a 2-d matrix: More...
SPHINXBASE_EXPORT int32 | bio_fread_3d (void ****arr, size_t e_sz, uint32 *d1, uint32 *d2, uint32 *d3, FILE *fp, uint32 swap, uint32 *chksum)
| Read a 3-d array (set of matrices) More...
SPHINXBASE_EXPORT void | bio_verify_chksum (FILE *fp, int32 byteswap, uint32 chksum)
| Read and verify checksum at the end of binary file. More...
SPHINXBASE_EXPORT int16 * | bio_read_wavfile (char const *directory, char const *filename, char const *extension, int32 header, int32 endian, int32 *nsamps)
| Read raw data from the wav file. More...

## Detailed Description

Cross platform binary IO to process files in sphinx3 format.

Definition in file bio.h.

## Macro Definition Documentation

#define REVERSE_SENSE_SWAP_INT16 | ( |  | x | ) |

"reversed senses" SWAP, ARCHAN: This is still incorporated in Sphinx 3 because lm3g2dmp used it.

Don't think that I am very happy with it.

Definition at line 103 of file bio.h.

## Function Documentation

SPHINXBASE_EXPORT int32 bio_fread | ( | void * | buf,
|  | int32 | el_sz,
|  | int32 | n_el,
|  | FILE * | fp,
|  | int32 | swap,
|  | uint32 * | chksum
| ) |  |

Like fread but perform byteswapping and accumulate checksum (the 2 extra arguments).

But unlike fread, returns -1 if required number of elements (n_el) not read; also, no byteswapping or checksum accumulation is performed in that case.

Parameters

  fp | In: An input file pointer
  swap | In: Byteswap iff (swap != 0)
  chksum | In/Out: Accumulated checksum

Definition at line 326 of file bio.c.

Referenced by bio_fread_1d(), bio_fread_2d(), bio_fread_3d(), and logmath_read().

SPHINXBASE_EXPORT int32 bio_fread_1d | ( | void ** | buf,
|  | size_t | el_sz,
|  | uint32 * | n_el,
|  | FILE * | fp,
|  | int32 | sw,
|  | uint32 * | ck
| ) |  |

Read a 1-d array (fashioned after fread):

- 4-byte array size (returned in n_el)
- memory allocated for the array and read (returned in buf)

Byteswapping and checksum accumulation performed as necessary. Fails fatally if expected data not read. Return value: number of array elements allocated and read; -1 if error.

Parameters

  buf | Out: contains array data; allocated by this function; can be freed using ckd_free
  el_sz | In: Array element size
  n_el | Out: Number of array elements allocated/read
  fp | In: File to read
  sw | In: Byteswap iff (swap != 0)
  ck | In/Out: Accumulated checksum

Definition at line 364 of file bio.c.

References bio_fread(), ckd_calloc, and E_FATAL.

Referenced by bio_fread_2d(), and bio_fread_3d().

SPHINXBASE_EXPORT int32 bio_fread_2d | ( | void *** | arr,
|  | size_t | e_sz,
|  | uint32 * | d1,
|  | uint32 * | d2,
|  | FILE * | fp,
|  | uint32 | swap,
|  | uint32 * | chksum
| ) |  |

Read a 2-d matrix:

- 4-byte # rows, # columns (returned in d1, d2, d3)
- memory allocated for the array and read (returned in buf)

Byteswapping and checksum accumulation performed as necessary. Fails fatally if expected data not read. Return value: number of array elements allocated and read; -1 if error.

Definition at line 384 of file bio.c.

References bio_fread(), bio_fread_1d(), ckd_alloc_2d_ptr, and E_ERROR_SYSTEM.

SPHINXBASE_EXPORT int32 bio_fread_3d | ( | void **** | arr,
|  | size_t | e_sz,
|  | uint32 * | d1,
|  | uint32 * | d2,
|  | uint32 * | d3,
|  | FILE * | fp,
|  | uint32 | swap,
|  | uint32 * | chksum
| ) |  |

Read a 3-d array (set of matrices)

- 4-byte # matrices, # rows, # columns (returned in d1, d2, d3)
- memory allocated for the array and read (returned in buf)

Byteswapping and checksum accumulation performed as necessary. Fails fatally if expected data not read. Return value: number of array elements allocated and read; -1 if error.

Definition at line 430 of file bio.c.

References bio_fread(), bio_fread_1d(), ckd_alloc_3d_ptr, and E_ERROR_SYSTEM.

Referenced by feat_read_lda().

SPHINXBASE_EXPORT int32 bio_fwrite | ( | void * | buf,
|  | int32 | el_sz,
|  | int32 | n_el,
|  | FILE * | fp,
|  | int32 | swap,
|  | uint32 * | chksum
| ) |  |

Like fwrite but perform byteswapping and accumulate checksum (the 2 extra arguments).

Returns
  the number of elemens written (like fwrite).

Parameters

  fp | In: An input file pointer
  swap | In: Byteswap iff (swap != 0)
  chksum | In/Out: Accumulated checksum

Definition at line 342 of file bio.c.

References ckd_calloc, and ckd_free().

Referenced by logmath_write().

SPHINXBASE_EXPORT void bio_hdrarg_free | ( | char ** | name,
|  | char ** | val
| ) |  |

Free name and value strings previously allocated and returned by bio_readhdr.

Parameters

  name | In: Array previously returned by bio_readhdr
  val | In: Array previously returned by bio_readhdr

Definition at line 121 of file bio.c.

References ckd_free().

Referenced by bio_readhdr(), feat_read_lda(), and logmath_read().

SPHINXBASE_EXPORT int16* bio_read_wavfile | ( | char const * | directory,
|  | char const * | filename,
|  | char const * | extension,
|  | int32 | header,
|  | int32 | endian,
|  | int32 * | nsamps
| ) |  |

Read raw data from the wav file.

Parameters

  directory | the folder where the file is located
  filename | the name of the file
  extension | file extension
  header | the size of the header to skip usually 44 bytes.
  endian | Endian of the data
  nsamps | number of samples read

Returns
  pointer to the data

Definition at line 507 of file bio.c.

References ckd_calloc, ckd_free(), E_ERROR_SYSTEM, and E_FATAL_SYSTEM.

SPHINXBASE_EXPORT int32 bio_readhdr | ( | FILE * | fp,
|  | char *** | name,
|  | char *** | val,
|  | int32 * | swap
| ) |  |

Read binary file format header: has the following format.

        s3
        <argument-name> <argument-value>
        <argument-name> <argument-value>
        ...
        endhdr
        4-byte byte-order word used to find file byte ordering relative to host machine.

Lines beginning with # are ignored. Memory for name and val allocated by this function; use bio_hdrarg_free to free them.

Returns
  : 0 if successful, -1 otherwise.

Parameters

  fp | In: File to read
  name | Out: array of argument name strings read
  val | Out: corresponding value strings read
  swap | Out: file needs byteswapping iff (*swap)

Definition at line 187 of file bio.c.

References bio_hdrarg_free(), ckd_calloc, ckd_salloc, and E_ERROR.

Referenced by feat_read_lda(), and logmath_read().

SPHINXBASE_EXPORT void bio_verify_chksum | ( | FILE * | fp,
|  | int32 | byteswap,
|  | uint32 | chksum
| ) |  |

Read and verify checksum at the end of binary file.

Fails fatally if there is a mismatch.

Parameters

  fp | In: File to read
  byteswap | In: Byteswap iff (swap != 0)
  chksum | In: Value to compare with checksum in file

Definition at line 492 of file bio.c.

References E_FATAL.

Referenced by logmath_read().

SPHINXBASE_EXPORT int32 bio_writehdr_version | ( | FILE * | fp,
|  | char * | version
| ) |  |

Write a simple binary file header, containing only the version string.

Also write the byte order magic word.

Returns
  : 0 if successful, -1 otherwise.

Parameters

  fp | Output: File to write
  version | Input: A string of version

Definition at line 137 of file bio.c.