Class
BedIOContext
The I/O context to use for BED I/O.
BedIOContext<TNameStore[, TNameStoreCache]>
Include Headers
bed_io.h
Parameters

TNameStore | The name store class.
TNameStoreCache | The name store cache class. Default: NameStoreCache<TNameStore>

Typedefs

TNameStore | The name store class.
TNameStoreCache | The name store cache class.

Member Functions

BedIOContext | Constructor.

Functions

nameStore | Return reference to name store from BedIOContext.
nameStoreCache | Return reference to name store cache from BedIOContext.

Examples
Creating a BedIOContext for a raw StringSet of CharString.
StringSet<CharString> nameStore;
NameStoreCache<StringSet<CharString> > nameStoreCache(nameStore);
BedIOContext<StringSet<CharString> > bedIOContext(nameStore, nameStoreCache);
// ...
Using a BedIOContext with a FragmentStore.
typedef FragmentStore<>::TContigNameStore TNameStore;
typedef NameStoreCache<TNameStore> TNameStoreCache;
FragmentStore<> store;
// Optionally, do something with store.
typedef BedIOContext<TNameStore, TNameStoreCache> TBedIOContext;
TBedIOContext bedIOContext(store.contigNameStore, store.contigNameStoreCache);
// ...
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