Class Specialization
D2z AFScore
D2z computes a z-score of the inner product of kmer count vectors

AFScore

D2z AFScore

AFScore<D2z>
Include Headers
seqan/alignment_free.h
Remarks
D2z can be used for alignment-free sequence comparison. The algorithm differs from the original implementation by the way masked sequences are handled
Specialization of
AFScore
Data Members

bgModelOrder | Order of the background model
kmerSize | Size of the kmers

Member Functions

AFScore | Constructor

Functions

alignmentFreeComparison | Computes the pairwise similarity scores for a set of sequences (AFScore)

SeqAn - Sequence Analysis Library - www.seqan.de

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