Enums
BAM I/O

BamFlags | Shortcuts to the bitmask flags for BAM/SAM files.
BamHeaderRecordType | Enumeration for the header record type.
BamSortOrder | Enumeration for the header record type.
BamStream::Format | Select the format to use for reading/writing.
BamStream::OperationMode | Select the operation mode of a BamStream.

BED I/O

BedStream::Mode | Open mode for the BedStream class.

Fragment Store

Predefined Annotation Types | Predefined annotation type ids.

GFF I/O

GffStream::FileFormat | File format for writing in the GffStream class.
GffStream::Mode | Open mode for the GffStream class.

Input/Output

FileMappingAdvise | Enum with mmap advise values.
FileMappingMode | Flags to define the mapping mode of mapFileSegment.
FileOpenMode | Flags to select the open mode of a File or external string.
SequenceStream::FileFormat | Select the file format to read/write.
SequenceStream::FileType | Select the file type to read/write.
SequenceStream::OperationMode | Select the operation mode of a SequenceStream.
TokenizeResult | Enum with return values for Tokenizing operations.

Seed Handling

Extension Direction | The direction in which a seed should be extended.

Sequences

FileMappingAdvise | Enum with mmap advise values.
FileMappingMode | Flags to define the mapping mode of mapFileSegment.

VCF I/O

VcfStream::Mode | Open mode for the VcfStream class.

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