Class
JoinConfig
Specifies the strategy and all necessary parameters used to journal a sequence to a reference sequence.

JoinConfig

GlobalAlign | GlobalChain

JoinConfig<TMethod>
Include Headers
seqan/journal_set.h
Parameters

TMethod | The method type. Types: GlobalAlign, GlobalChain

Remarks
SeqAn offers two general methods to compute the journal. The first one uses a globalAlignment function and the second one uses an anchor based approach.
Specializations

GlobalAlign | Selects a global alignment method to join a Journaled String to a global reference sequence.
GlobalChain | Selects an anchor based method to join a Journaled String to a global reference sequence.

Functions

join | Joins a Journaled String to a Journaled Set by computing and journaling differences to the global reference sequence.

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