Class Specialization
Rna
Alphabet for RNA.

FiniteOrderedAlphabetConcept

SimpleType

Rna

Rna
Include Headers
seqan/basic.h
Remarks
The ValueSize of Rna is 4. The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'U' = 3.
Objects of type Rna can be converted to various other types and vice versa. An object that has a value not in {'A', 'C', 'G', 'U'} is converted to 'A'.
Rna is typedef for SimpleType<char,Rna_>, while Rna_ is a helper specialization tag class.
Specialization of
SimpleType
Implements
FiniteOrderedAlphabetConcept
Metafunctions

IsSimple | Tests type to be simple. (SimpleType)
Spec | The spec of a class. (SimpleType)
Value | Type of the items in the container or behind an iterator. (SimpleType)

Functions

assign | Assigns one object to another object. (SimpleType)
ordValue | Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType)

See Also
RnaIterator, ValueSize, Rna5, RnaString
SeqAn - Sequence Analysis Library - www.seqan.de

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