Class Specialization
Single-Pass RecordReader
Record reader specialization for single-pass reading.

RecordReader

Single-Pass RecordReader

Single-Pass String RecordReader

RecordReader<TStream, SinglePass<void> >
Include Headers
seqan/stream.h
Parameters

TStream | The StreamConcept type to work on.

Remarks
Is not default or copy constructable.
Specialization of
RecordReader
Specializations

Single-Pass String RecordReader | Record reader specialization for single-pass reading from memory mapped files.

Member Functions

RecordReader | Constructor (RecordReader)

Functions

atEnd | Returns true if there is no more data to be read. (RecordReader)
countLine | count characters in a line not including \r and \n (RecordReader)
goNext | Advance record reader to next position. (RecordReader)
guessStreamFormat | check whether the data provided by reader is (one of) the specified format(s). (RecordReader)
nextIs | Query whether the next record is of a given type. (RecordReader)
position | Returns the current position of the reader. (RecordReader)
read | Read a VcfHeader.
read2 | reads an entire document from a StreamConcept, by the means of RecordReader (RecordReader)
readAlphaNums | Read characters from stream as long as characters are letters (RecordReader)
readDigits | Read characters from stream as long as characters are digits (RecordReader)
readDna5IgnoringWhitespaces | Read characters from stream, as long as they are DNA5 characters. Skip over whitespaces. (RecordReader)
readFloat | Read characters from stream as long as the number is a valid floating point numbers. (RecordReader)
readGraphs | Read characters from stream as long as characters are graph characters. (RecordReader)
readIdentifier | Read characters from stream as long as characters are identifiers (alphanumeric, '-', and '_'). (RecordReader)
readLetters | Read characters from stream as long as characters are letters (RecordReader)
readLine | Read a line from stream and save it to buffer (RecordReader)
readLineStripTrailingBlanks | Read a line from stream and save it to buffer, remove trailing blanks (RecordReader)
readNChars | Read exactly n characters from stream into buffer (RecordReader)
readNCharsIgnoringWhitespace | Read n characters from stream into buffer, but skip certain Chars (RecordReader)
readRecord | reads one record (e.g. a single DNA-sequence and its meta data) from a StreamConcept, by the means of RecordReader (RecordReader)
readUntilBlank | Read characters from stream into buffer until Blank is encountered (RecordReader)
readUntilChar | Read characters from stream into buffer until Char is encountered (RecordReader)
readUntilOneOf | Read characters from stream into buffer until one of the given characters is encountered (RecordReader)
readUntilTabOrLineBreak | Read characters from stream until a tab or line-break occurs. (RecordReader)
readUntilWhitespace | Read characters from stream into buffer until Whitespace is encountered (RecordReader)
resultCode | Returns int current status code for reader (0 on success). (RecordReader)
setPosition | Returns the current position of the reader. (RecordReader)
skipBlanks | Skip (i.e. read without saving) characters from stream until non-Blank is encountered (RecordReader)
skipChar | Skip one character that must be equal to a given one for this function to succeed. (RecordReader)
skipLine | Skip a line in stream and go to beginning of next (RecordReader)
skipNChars | Skip exactly n characters from stream (RecordReader)
skipNCharsIgnoringWhitespace | Skip n characters from stream, not counting whitespaces (RecordReader)
skipUntilBlank | Skip (i.e. read without saving) characters from stream until Blank is encountered (RecordReader)
skipUntilChar | Skip (i.e. read without saving) characters from stream until Char is encountered (RecordReader)
skipUntilGraph | Skip (i.e. read without saving) characters from stream until printable, non-' ' character is encountered (RecordReader)
skipUntilLineBeginsWithChar | Skip input until the first graphical(see isgraph) character of a line is equal to c (RecordReader)
skipUntilLineBeginsWithOneCharOfStr | Skip input until a line begins with a one of the characters in str (RecordReader)
skipUntilLineBeginsWithStr | Skip input until a line begins with str. (RecordReader)
skipUntilString | Skip (i.e. read without saving) characters from stream until String is encountered (RecordReader)
skipUntilWhitespace | Skip (i.e. read without saving) characters from stream until Whitespace is encountered (RecordReader)
skipWhitespaces | Skip (i.e. read without saving) characters from stream until non-Whitespace is encountered (RecordReader)
value | Returns the current value of the reader. (RecordReader)

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