Class Specialization
Bed12 BedRecord
BedRecord with 12 fields.
This BedRecord specialization stores all fields of a BED file.

BedRecord

Bed3 BedRecord

Bed4 BedRecord

Bed5 BedRecord

Bed6 BedRecord

Bed12 BedRecord

class BedRecord<Bed12>
Include Headers
seqan/bed_io.h
Specialization of
Bed6 BedRecord
Data Members

beginPosition | Begin position on the reference. (BedRecord)
blockBegins | The begin positions of the blocks (Alloc String of __int32).
blockCount | The number of blocks.
blockSizes | The sizes of the blocks (Alloc String of __int32).
data | Any data after the last position. (BedRecord)
endPosition | End position on the reference. (BedRecord)
INVALID_POS | Constant for invalid positions. (BedRecord)
INVALID_REFID | Constant for invalid references. (BedRecord)
itemRgb | RGB color of item (BedRgb).
name | The name of the interval (CharString). (Bed4 BedRecord)
ref | Name of the interval's reference (CharString). (BedRecord)
rID | Numeric id of the interval's reference (__int32, defaults to INVALID_REFID). (BedRecord)
score | The score of the interval (stored as CharString to allow more flexible annotation). (Bed5 BedRecord)
strand | The strand of the interval (stored as char, one of ., '-', and +). (Bed6 BedRecord)
thickBegin | The begin position of thick drawing (__int32).
thickEnd | The end position of thick drawing (__int32).

Member Functions

BedRecord | Constructor. (BedRecord)

Functions

clear | Reset BED record to state after default initialization. (BedRecord)
readRecord | Read a record from a BedStream (BedRecord)
writeRecord | Write a record to a BedStream (BedRecord)

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