Class Specialization
D2 AFScore
D2 computes the inner product of the kmer count vectors

AFScore

D2 AFScore

AFScore<D2>
Include Headers
seqan/alignment_free.h
Remarks
D2 can be used for alignment-free sequence comparison
Specialization of
AFScore
Data Members

kmerSize | Size of the kmers

Member Functions

AFScore | Constructor

Functions

alignmentFreeComparison | Computes the pairwise similarity scores for a set of sequences (AFScore)

SeqAn - Sequence Analysis Library - www.seqan.de

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