Class
BamIndex
Access to BAM Indices.

BamIndex

BAI BamIndex

BamIndex<TSpec>
Include Headers
seqan/bam_io.h
Parameters

TSpec | Tag to specialize index.

Remarks
This is an abstract class, don't use it itself but its specializations.
Specializations

BAI BamIndex | Access to BAI (samtools-style) Indices.

Functions

getUnalignedCount | Query index for number of unaligned reads.
jumpToOrphans | Seek to orphans block in BAM BGZF stream using an index.
jumpToRegion | Seek in BAM BGZF stream using an index.
read | Load a BAM index from a given file name.

SeqAn - Sequence Analysis Library - www.seqan.de

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