Class
AFScore
Used to specify parameters and methods for alignment-free sequence comparison

AFScore

D2 AFScore | D2Star AFScore | D2z AFScore | N2 AFScore

AFScore<TScoreType>
Include Headers
seqan/alignment_free.h
Parameters

TScoreType | Method to use: N2, D2, D2Star, D2z

Specializations

D2 AFScore | D2 computes the inner product of the kmer count vectors
D2Star AFScore | D2Star computes the inner product of the standardised kmer count vectors
D2z AFScore | D2z computes a z-score of the inner product of kmer count vectors
N2 AFScore | N2 computes the inner product of the standardised neighbourhood kmer count vectors

Functions

alignmentFreeComparison | Computes the pairwise similarity scores for a set of sequences

See Also
alignmentFreeComparison
SeqAn - Sequence Analysis Library - www.seqan.de

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