| Function appendLocalMatch Append a new local match to a LocalMatchStore appendLocalMatchStore(store, subjectId, subjectBeginPos, subjectEndPos, queryId, queryBeginPos, queryEndPos) appendLocalMatchStore(store, subjectName, subjectBeginPos, subjectEndPos, queryName, queryBeginPos, queryEndPos, cigarStringBuffer) Include Headers seqan/parse_lm.h Parameters
store | The store to add the local match to. Types: LocalMatchStore
subjectId | Numeric subject sequence identifier.
subjectName | The textual name of the query sequence. Types: CharString
subjectBegin | The begin position of the match in the subject.
subjectEnd | The end position of the match in the subject.
queryId | Numeric query sequence identifier.
queryName | The textual name of the query sequence. Types: CharString
queryBegin | The begin position of the match in the query.
queryEnd | The end position of the match in the query.
cigarStringBuffer | Buffer with the cigar string of the local alignment. Types: CharString
Remarks Matches on the reverse-complement are encoded by the begin position being greater than the begin position. Member of LocalMatchStore SeqAn - Sequence Analysis Library - www.seqan.de

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