| Class LocalAlignmentEnumerator Enumerate local alignments using the Waterman-Eggert algorithm. This is an abstract base class for the alignment enumeration; the specializations provide the actual implementaiton of banded and unbanded local aligment search.
LocalAlignmentEnumerator
Banded LocalAlignmentEnumerator | Unbanded LocalAlignmentEnumerator
LocalAlignmentEnumerator<TScore, TSpec> Include Headers seqan/align.h Parameters
TScore | The Score type to use. Types: Score
TSpec | Specialization tag.
Specializations
Banded LocalAlignmentEnumerator | Banded enumeration of local alignments using the Waterman-Eggert algorithm.
Unbanded LocalAlignmentEnumerator | Unbanded enumeration of local alignments using the Waterman-Eggert algorithm.
Functions
getScore | Compute next suboptimal local alignment.
nextLocalAlignment | Compute next suboptimal local alignment.
Examples See the specializations for usage examples. See Also localAlignment, Pairwise Local Alignment Algorithms SeqAn - Sequence Analysis Library - www.seqan.de

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