| Function printAlignment Prints a window of the visible layout of reads into a outstream. printAlignment(stream, format, layout, store, contigId, posBegin, posEnd, lineBegin, lineEnd) Include Headers seqan/store.h Parameters
stream | A C++ outstream, e.g. std::cout.
layout | A layout structure created by a previous call of layoutAlignment. Types: AlignedReadLayout
format | Output format. Types: Raw Remarks: This tag is used for subsequent calls of write for contig and read gaps data structures.
store | The fragment store. Types: FragmentStore
contigId | The contigId of the affected contig.
posBegin | Window begin position in gap-space.
posEnd | Window end position in gap-space.
lineBegin | Begin line of the window.
lineEnd | End line of the window.
Remarks The window coordinates (beginPos, ...) may be chosen bigger than the layout. The empty space is then filled with whitespaces. Member of AlignedReadLayout See Also layoutAlignment SeqAn - Sequence Analysis Library - www.seqan.de

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