| Class Specialization Mums Iterator Iterator to search for all maximum unique matches.
IteratorAssociatedTypesConcept
Iter
ForwardIteratorConcept | VSTree Iterator
BottomUp Iterator
Mums Iterator
Iterator<TContainer, Mums>::Type Iter<TContainer, VSTree< BottomUp<Mums> > > Include Headers seqan/index.h Parameters
TContainer | Type of an index that can be iterated with a bottom-up iterator. Metafunctions: Container Types: IndexEsa
Specialization of BottomUp Iterator Implements ForwardIteratorConcept, IteratorAssociatedTypesConcept Metafunctions
Container | Type of the container given an iterator. (Iter)
Difference | Type of an object that stores the difference between two iterators. (Iter)
GetValue | Type for reading values. (Iter)
Iterator | Type of iterator objects that are used to traverse the container. (Iter)
Position | Type of an object that represents a position in a container. (Iter)
Reference | Reference type. (Iter)
Spec | The spec of a class. (Iter)
Value | Type of the items in the container or behind an iterator. (Iter)
Member Functions
Iterator | Constructor (BottomUp Iterator)
Functions
alignment | Returns an alignment of the occurrences of the representative substring in the index text. (VSTree Iterator)
assignValue | Assigns value to item. (Iter)
atBegin | Determines whether an iterator is at the beginning position. (Iter)
atEnd | Determines whether an iterator is at the end position. (BottomUp Iterator)
atEndOfSequence | Returns true if the iterator is at the end of a sequence. (Iter)
begin | Returns an iterator pointing to the root node of the virtual string tree/trie of an index. The only exception are Postorder iterators, where begin returns an iterator pointing to the leftmost node in the tree/trie. (VSTree Iterator)
childrenAreLeaves | Test whether iterator points to a node with only leaf-children. (VSTree Iterator)
container | Container of an iterator. (VSTree Iterator)
countChildren | Count the number of children of a tree node. (VSTree Iterator)
countOccurrences | Returns the number of occurrences of representative substring or a q-gram in the index text. (VSTree Iterator)
difference | The difference between two iterators. (Iter)
getFrequency | Returns the number of sequences, which contain the representative as a substring. (VSTree Iterator)
getOccurrence | Returns an occurrence of the representative substring or a q-gram in the index text. (VSTree Iterator)
getOccurrences | Returns all occurrences of the representative substring or a q-gram in the index text. (VSTree Iterator)
getOccurrencesBwt | Returns the characters left beside all occurrence of the representative substring in the index text. (VSTree Iterator)
getValue | Access to the value. (Iter)
goBegin | Iterates to the first position of a container. (BottomUp Iterator)
goEnd | Iterates to the last position of a container. (BottomUp Iterator)
goFurther | Iterates some steps further. (Iter)
goNext | Iterates to next position. (BottomUp Iterator)
goPrevious | Iterates to pevious position. (Iter)
isLeaf | Test whether a tree iterator points to a leaf. (VSTree Iterator)
isLeftMaximal | Test whether the occurrences of an iterator's representative mutually differ in the character left of the hits. (VSTree Iterator)
isPartiallyLeftExtensible | Test whether the characters left of the two occurrences of representative are equal. (VSTree Iterator)
isRightTerminal | Test whether iterator points to a suffix. (VSTree Iterator)
isRoot | Test whether a tree iterator points to the root node. (VSTree Iterator)
isUnique | Test whether the representative occurs only once in every sequence. (VSTree Iterator)
moveValue | Assigns value to item. (Iter)
nodeHullPredicate | If false this node and its subtree is concealed. (VSTree Iterator)
nodePredicate | If false this node will be skipped during the bottom-up traversal. (VSTree Iterator)
position | Position of an iterator. (Iter)
range | Returns the suffix array interval borders of occurrences of representative substring or a q-gram in the index text. (VSTree Iterator)
repLength | Returns the length of the substring representing the path from root to iterator node. (VSTree Iterator)
representative | Returns a substring representing the path from root to iterator node. (VSTree Iterator)
value | Reference to the value. (VSTree Iterator)
Example Programs Mummy, Maximal Unique Matches SeqAn - Sequence Analysis Library - www.seqan.de

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