| Function writeRecord Write one sequence record from to a SequenceStream object. The record is appended to the file if you have written out any previously. When writing out Dna5, qualities are automatically taken from the sequence characters. int writeRecord(seqIO, id, seq, [options]) int writeRecord(seqIO, id, seq, quals, [options]) Include Headers seqan/seq_io.h Parameters
seqIO | The SequenceStream object to write to. Types: SequenceStream
id | The identifier to write. Types: CharString
seq | The sequence to write. Types: String
quals | The qualities to write out. Types: CharString Remarks: If the sequence has no qualities, clear is called on quals to indicate this.
options | The configuration for writing FASTA and FASTQ files. Types: SequenceOutputOptions
Return Values An integer, 0 on success, 1 on errors. Types: int Member of SequenceStream Examples Write out two sequences to a FASTQ file. int main() { seqan::SequenceStream seqIO("in.fasta", seqan::SequenceStream::WRITE); seqan::StringSet<seqan::CharString> ids; appendValue(ids, "seq1"); appendValue(ids, "seq2"); seqan::StringSet<seqan::Dna5String> seqs; appendValue(seqs, "CGAT"); appendValue(seqs, "TTTT"); for (unsigned i = 0; i < length(ids); ++i) { int res = writeRecord(seqIO, ids[0], seqs[0]); if (res != 0) { std::cerr << "ERROR: Could not write records!\n"; return 1; } } return 0; } SeqAn - Sequence Analysis Library - www.seqan.de

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