| Class Specialization IndexWotd This index represents a lazy suffix tree, meaning that a path from the tree of the index in only computed, if it is traversed. For details see Giegerich et al., "Efficient implementation of lazy suffix trees".
Index
IndexWotd
IndexDfi
Index<TText, IndexWotd<> > Include Headers seqan/index.h Parameters
TText | The text type. Types: String
Remarks The fibres (see Index and Fibre) of this index are a partially sorted suffix array (see WotdSA) and the wotd tree (see WotdDir). Specialization of Index Specializations
IndexDfi | The Deferred Frequency Index (see Weese and Schulz, "Efficient string mining under constraints via the deferred frequency index").
Metafunctions
Fibre | Type of a specific container member (fibre). (Index)
SAValue | The default alphabet type of a suffix array, i.e. the type to store a position of a string or string set. (Index)
VertexDescriptor | Type of an object that represents a vertex descriptor.
Functions
begin | Returns an iterator pointing to the root node of the virtual string tree/trie of an index. The only exception are Postorder iterators, where begin returns an iterator pointing to the leftmost node in the tree/trie.
clear | Resets an object. (Index)
countSequences | Return the number of sequences in an index' underlying text. (Index)
end | The end of a container. (Index)
getFibre | Returns a specific fibre of a container. (Index)
indexCreate | Creates a specific Fibre. (Index)
indexRequire | On-demand creation of a specific Fibre. (Index)
indexSA | Shortcut for getFibre(.., FibreSA). (Index)
indexSupplied | Returns whether a specific Fibre is present. (Index)
indexText | Shortcut for getFibre(index, FibreText()). (Index)
length | The number of characters in the underlying text of the index is returned. (Index)
open | This functions opens an index from disk. (Index)
resizeVertexMap | Initializes a vertex map.
save | This functions saves an index to disk. (Index)
Example Programs Maximal Repeats, Constraint Iterator, Index Finder StringSet, Mummy, Maximal Unique Matches, Index lcpAt, saAt, Index Finder, Index countOccurrencesMultiple, Supermaximal Repeats, Index countChildren See Also WOTD Index Fibres SeqAn - Sequence Analysis Library - www.seqan.de

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