| Function stringToStringSet Transform a String into a StringSet containing this String. stringToStringSet(stringSet, string) stringToStringSet(dnaStringSet, dna5String) Include Headers seqan/alignment_free.h Parameters
stringSet | StringSet containing string Types: StringSet
string | String Types: String
dnaStringSet | StringSet<DnaString> created from dna5String by cutting out all Ns from dna5String. Types: StringSet
dna5String | DNA5 String where all Ns should be removed, the remaining sequences will be stored in dnaStringSet Types: Dna5String
Return Values Returns a StringSet consisting of string, in the case of Dna5 to Dna conversion all Ns will be removed from dna5String. Examples Transform a masked DNA sequence into a set of sequences with all masked parts removed. using namespace seqan; Dna5String sequenceDna5 = "NNNNNNTTTCCGAAAAGGTANNNNNGCAACTTTANNNCGTGATCAAAGTTTTCCCCGTCGAAATTGGGNNTG"; StringSet<DnaString> sequencesDna; stringToStringSet(sequencesDna, sequenceDna5); // Print the masked sequence std::cout<<sequenceDna5<<"\n"; // Print the sequence with the masked parts removed for(unsigned i = 0; i < length(sequencesDna); ++i) std::cout<<sequencesDna[i]<<"\n"; // sequencesDna[0] = "TTTCCGAAAAGTA" // sequencesDna[1] = "GCAACTTTA" // sequencesDna[2] = "CGTGATCAAAGTTTTCCCCGTCGAAATTGGG" // sequencesDna[3] = "TG" See Also MarkovModel, alignmentFreeComparison, cutNs, countKmers SeqAn - Sequence Analysis Library - www.seqan.de

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