| Function score Returns the score for aligning the entries entryH and entryV. score(score, value1, value2) [deprecated] score(score, entryH, entryV) Include Headers seqan/score.h Parameters
score | A scoring scheme. The scoring scheme to use. Types: Score, Score
value1 | Aligned character in the first sequence.
value2 | Aligned character in the second sequence.
entryH | Entry in sequence one. Types: SequenceEntryForScore
entryV | Entry in sequence two. Types: SequenceEntryForScore
Status The version that explicitely requires two characters is deprecated. For using (or defining) custom scoring schemes better use the functions score, scoreGapOpenVertical, scoreGapExtendVertical, scoreGapOpenHorizontal and scoreGapExtendHorizontal as they require character positions and sequences and allow for position-dependent scoring schemes. Member of Score See Also sequenceEntryForScore, ConsensusScoreSequenceEntry SeqAn - Sequence Analysis Library - www.seqan.de

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