abstText	pubMedAbst-class
abstText,pubMedAbst-method	pubMedAbst-class
ACC2homology	LL2homology
accessionToUID	accessionToUID
ACCNUMStats	ACCNUMStats
allValidKeys	isValidkey
allValidKeys,character-method	isValidkey
allValidKeys,OrgDb-method	isValidkey
annotate-defunct	annotate-defunct
annPkgName	annPkgName
aqListGOIDs	aqListGOIDs
articleTitle	pubMedAbst-class
articleTitle,pubMedAbst-method	pubMedAbst-class
authors	pubMedAbst-class
authors,pubMedAbst-method	pubMedAbst-class
blastSequences	blastSequences
buildChromLocation	buildChromLocation
buildPubMedAbst	buildPubMedAbst
checkArgs	findNeighbors
chrCats	chrCats
chromInfo	chromLocation-class
chromInfo,chromLocation-method	chromLocation-class
chromLengths	chromLocation-class
chromLengths,chromLocation-method	chromLocation-class
chromLocation	chromLocation-class
chromLocation-class	chromLocation-class
chromLocs	chromLocation-class
chromLocs,chromLocation-method	chromLocation-class
chromNames	chromLocation-class
chromNames,chromLocation-method	chromLocation-class
clearRepository	setRepository
compatibleVersions	compatibleVersions
createLLChrCats	chrCats
createMAPIncMat	chrCats
dataSource	chromLocation-class
dataSource,chromLocation-method	chromLocation-class
dropECode	dropECode
entrezGeneByID	entrezGeneByID
entrezGeneQuery	entrezGeneQuery
fileName	HTMLPage-class
fileName,HTMLPage-method	HTMLPage-class
filterGOByOntology	filterGOByOntology
findChr4LL	findNeighbors
findNeighbors	findNeighbors
FramedHTMLPage	HTMLPage-class
FramedHTMLPage,HTMLPage-method	HTMLPage-class
FramedHTMLPage-class	HTMLPage-class
genbank	genbank
genelocator	annotate-defunct
geneSymbols	chromLocation-class
geneSymbols,chromLocation-method	chromLocation-class
getAnnMap	getAnnMap
getBoundary	findNeighbors
getCells	getTDRows
getEG	getSYMBOL
getEvidence	getEvidence
getGI	getSeq4Acc
getGO	getSYMBOL
getGOChildren	getGOTerm
getGOdesc	getSYMBOL
getGOOntology	getGOTerm
getGOParents	getGOTerm
getGOTerm	getGOTerm
getGPLNames	readGEOAnn
getLL	getSYMBOL
getOntology	getOntology
getOrgNameNCode	mapOrgs
getPMID	getSYMBOL
getPMInfo	getPMInfo
getQuery4Affy	getTDRows
getQuery4EN	getTDRows
getQuery4ENSEMBL	getTDRows
getQuery4FB	getTDRows
getQuery4GB	getTDRows
getQuery4LL	annotate-defunct
getQuery4OMIM	getTDRows
getQuery4SP	getTDRows
getQuery4TR	getTDRows
getQuery4UG	getTDRows
getQueryLink	getTDRows
getRepositories	setRepository
getSAGEFileInfo	readGEOAnn
getSAGEGPL	readGEOAnn
getSEQ	getSeq4Acc
getSYMBOL	getSYMBOL
getTDRows	getTDRows
getUniqAnnItem	getSYMBOL
getValidChr	findNeighbors
GO2heatmap	GO2heatmap
GOmnplot	GOmnplot
hasGOannote	hasGOannote
hgByChroms	hgByChroms
hgCLengths	hgCLengths
HGID2homology	LL2homology
hgu95Achroloc	hgu95Achroloc
hgu95Achrom	hgu95Achrom
hgu95All	hgu95All
hgu95AProbLocs	hgu95AProbLocs
hgu95Asym	hgu95Asym
homoACC	homoData-class
homoACC,homoData-method	homoData-class
homoData	homoData-class
homoData-class	homoData-class
homoHGID	homoData-class
homoHGID,homoData-method	homoData-class
homoLL	homoData-class
homoLL,homoData-method	homoData-class
homoOrg	homoData-class
homoOrg,homoData-method	homoData-class
homoPS	homoData-class
homoPS,homoData-method	homoData-class
homoType	homoData-class
homoType,homoData-method	homoData-class
homoURL	homoData-class
homoURL,homoData-method	homoData-class
HTMLPage	HTMLPage-class
htmlpage	htmlpage
HTMLPage,HTMLPage-method	HTMLPage-class
HTMLPage-class	HTMLPage-class
initialize,FramedHTMLPage-method	HTMLPage-class
isValidKey	isValidkey
isValidKey,character,character-method	isValidkey
isValidKey,character,OrgDb-method	isValidkey
journal	pubMedAbst-class
journal,pubMedAbst-method	pubMedAbst-class
KEGG2heatmap	GO2heatmap
KEGG2heatmap,character,eSet,character-method	GO2heatmap
KEGG2heatmap,character,matrix,character-method	GO2heatmap
KEGGmnplot	GOmnplot
KEGGmnplot,character,eSet,character-method	GOmnplot
KEGGmnplot,character,matrix,character-method	GOmnplot
LL2homology	LL2homology
lookUp	getSYMBOL
mainPage	HTMLPage-class
mainPage,FramedHTMLPage-method	HTMLPage-class
mainPage,HTMLPage-method	HTMLPage-class
makeAnchor	makeAnchor
mapOrgs	mapOrgs
nChrom	chromLocation-class
nChrom,chromLocation-method	chromLocation-class
neighborGeneFinder	annotate-defunct
organism	organism
organism,character-method	organism
organism,chromLocation-method	chromLocation-class
orgNameNCode	homoData-class
p2LL	p2LL
pageText	HTMLPage-class
pageText,HTMLPage-method	HTMLPage-class
pageTitle	HTMLPage-class
pageTitle,HTMLPage-method	HTMLPage-class
pm.abstGrep	pm.abstGrep
pm.getabst	pm.getabst
pm.titles	pm.titles
pmAbst2HTML	pmAbst2HTML
pmid	pubMedAbst-class
pmid,pubMedAbst-method	pubMedAbst-class
pmid2MIAME	pmid2MIAME
PMIDAmat	PMIDAmat
pmidQuery	pmidQuery
probesByLL	annotate-defunct
probesToChrom	chromLocation-class
probesToChrom,chromLocation-method	chromLocation-class
pubDate	pubMedAbst-class
pubDate,pubMedAbst-method	pubMedAbst-class
pubmed	pubmed
pubMedAbst	pubMedAbst-class
pubMedAbst,pubMedAbst-method	pubMedAbst-class
pubMedAbst-class	pubMedAbst-class
PWAmat	PWAmat
readGEOAnn	readGEOAnn
readIDNAcc	readGEOAnn
readUrl	readGEOAnn
serializeDataPkgEnvs	serializeEnv
serializeEnv	serializeEnv
setRepository	setRepository
show,chromLocation-method	chromLocation-class
show,FramedHTMLPage-method	HTMLPage-class
show,homoData-method	homoData-class
show,HTMLPage-method	HTMLPage-class
show,pubMedAbst-method	pubMedAbst-class
sidePage	HTMLPage-class
sidePage,FramedHTMLPage-method	HTMLPage-class
sidePage,HTMLPage-method	HTMLPage-class
toFile	HTMLPage-class
toFile,FramedHTMLPage-method	HTMLPage-class
toFile,HTMLPage-method	HTMLPage-class
topPage	HTMLPage-class
topPage,FramedHTMLPage-method	HTMLPage-class
topPage,HTMLPage-method	HTMLPage-class
UniGeneQuery	UniGeneQuery
updateSymbolsToValidKeys	updateSymbolsToValidKeys
usedChromGenes	usedChromGenes
weightByConfi	findNeighbors
whatACC	ACCNUMStats
