##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##bcftoolsVersion=1.9+htslib-1.9
##bcftoolsCommand=mpileup -Q 0 -d 1000000 --annotate FORMAT/AD,FORMAT/ADF,FORMAT/ADR --no-reference -r seq1:90 --output-type v --output ex1-seq1:90.vcf ex1.bam
##contig=<ID=seq1,length=1575>
##contig=<ID=seq2,length=1584>
##ALT=<ID=*,Description="Represents allele(s) other than observed.">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=IDV,Number=1,Type=Integer,Description="Maximum number of reads supporting an indel">
##INFO=<ID=IMF,Number=1,Type=Float,Description="Maximum fraction of reads supporting an indel">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=VDB,Number=1,Type=Float,Description="Variant Distance Bias for filtering splice-site artefacts in RNA-seq data (bigger is better)",Version="3">
##INFO=<ID=RPB,Number=1,Type=Float,Description="Mann-Whitney U test of Read Position Bias (bigger is better)">
##INFO=<ID=MQB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality Bias (bigger is better)">
##INFO=<ID=BQB,Number=1,Type=Float,Description="Mann-Whitney U test of Base Quality Bias (bigger is better)">
##INFO=<ID=MQSB,Number=1,Type=Float,Description="Mann-Whitney U test of Mapping Quality vs Strand Bias (bigger is better)">
##INFO=<ID=SGB,Number=1,Type=Float,Description="Segregation based metric.">
##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
##INFO=<ID=I16,Number=16,Type=Float,Description="Auxiliary tag used for calling, see description of bcf_callret1_t in bam2bcf.h">
##INFO=<ID=QS,Number=R,Type=Float,Description="Auxiliary tag used for calling">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths">
##FORMAT=<ID=ADF,Number=R,Type=Integer,Description="Allelic depths on the forward strand">
##FORMAT=<ID=ADR,Number=R,Type=Integer,Description="Allelic depths on the reverse strand">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	ex1.bam
seq1	90	.	N	G,A,C,<*>	0	.	DP=13;I16=0,0,13,0,0,0,260,6110,0,0,714,41636,0,0,114,1218;QS=0,0.946502,0.0288066,0.0246914,0;VDB=0.314346;SGB=-0.683931;MQ0F=0	PL:ADF:ADR:AD	105,33,0,107,25,104,108,25,107,105,105,33,107,108,105:0,11,1,1,0:0,0,0,0,0:0,11,1,1,0
