KG_P1_SampData          Simulated sample data for 1000 Genomes Phase 1
SeqArray-package        Data Management of Large-scale Whole-Genome
                        Sequence Variant Calls
SeqVarGDSClass          SeqVarGDSClass
seqAddValue             Add values to a GDS File
seqAlleleFreq           Get Allele Frequencies or Counts
seqApply                Apply Functions Over Array Margins
seqAsVCF                VariantAnnotation objects
seqBED2GDS              Conversion between PLINK BED and SeqArray GDS
seqBlockApply           Apply Functions Over Array Margins via Blocking
seqCheck                Data Integrity Checking
seqClose                Close the SeqArray GDS File
seqDelete               Delete GDS Variables
seqDigest               Hash function digests
seqEmptyFile            Empty GDS file
seqExampleFileName      Example files
seqExport               Export to a GDS File
seqGDS2SNP              Convert to a SNP GDS File
seqGDS2VCF              Convert to a VCF File
seqGet2bGeno            Get packed genotypes
seqGetData              Get Data
seqGetFilter            Get the Filter of GDS File
seqMerge                Merge Multiple SeqArray GDS Files
seqMissing              Missing genotype percentage
seqNewVarData           Variable-length data
seqNumAllele            Number of alleles
seqOpen                 Open a SeqArray GDS File
seqOptimize             Optimize the Storage of Data Array
seqParallel             Apply Functions in Parallel
seqParallelSetup        Setup/Get a Parallel Environment
seqRecompress           Recompress the GDS file
seqResetVariantID       Reset Variant ID in SeqArray GDS Files
seqSNP2GDS              Convert SNPRelate Format to SeqArray Format
seqSetFilter            Set a Filter to Sample or Variant
seqSetFilterCond        Set a Filter to Variant with Allele Count/Freq
seqStorageOption        Storage and Compression Options
seqSummary              Summarize a SeqArray GDS File
seqSystem               Get the parameters in the GDS system
seqTranspose            Transpose Data Array
seqUnitApply            Apply Function Over Variant Units
seqUnitCreate           Subset and merge the units
seqUnitFilterCond       Filter unit variants
seqUnitSlidingWindows   Sliding units of selected variants
seqVCF2GDS              Reformat VCF Files
seqVCF_Header           Parse the Header of a VCF/BCF File
seqVCF_SampID           Get the Sample IDs
