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  {title:'Alignment Algorithm Tags',name:'AlignmentAlgorithmTags',text:'',akas:'',subentries:[{'type': 'grouped_tag', 'name': 'AlignmentAlgorithmTags#Gotoh', 'title': 'Gotoh', 'id': 'AlignmentAlgorithmTags#Gotoh'}, {'type': 'grouped_tag', 'name': 'AlignmentAlgorithmTags#NeedlemanWunsch', 'title': 'NeedlemanWunsch', 'id': 'AlignmentAlgorithmTags#NeedlemanWunsch'}, {'type': 'grouped_tag', 'name': 'AlignmentAlgorithmTags#Hirschberg', 'title': 'Hirschberg', 'id': 'AlignmentAlgorithmTags#Hirschberg'}, {'type': 'grouped_tag', 'name': 'AlignmentAlgorithmTags#MyersBitVector', 'title': 'MyersBitVector', 'id': 'AlignmentAlgorithmTags#MyersBitVector'}, {'type': 'grouped_tag', 'name': 'AlignmentAlgorithmTags#MyersHirschberg', 'title': 'MyersHirschberg', 'id': 'AlignmentAlgorithmTags#MyersHirschberg'}, {'type': 'grouped_tag', 'name': 'AlignmentAlgorithmTags#LinearGaps', 'title': 'LinearGaps', 'id': 'AlignmentAlgorithmTags#LinearGaps'}, {'type': 'grouped_tag', 'name': 'AlignmentAlgorithmTags#AffineGaps', 'title': 'AffineGaps', 'id': 'AlignmentAlgorithmTags#AffineGaps'}, {'type': 'grouped_tag', 'name': 'AlignmentAlgorithmTags#DynamicGaps', 'title': 'DynamicGaps', 'id': 'AlignmentAlgorithmTags#DynamicGaps'}],loc:'group_AlignmentAlgorithmTags.html',langEntity:'group'},
  {title:'Pairwise Local Alignment Algorithms',name:'PairwiseLocalAlignmentAlgorithms',text:'',akas:'',subentries:[{'type': 'grouped_tag', 'name': 'PairwiseLocalAlignmentAlgorithms#SmithWaterman', 'title': 'SmithWaterman', 'id': 'PairwiseLocalAlignmentAlgorithms#SmithWaterman'}, {'type': 'grouped_tag', 'name': 'PairwiseLocalAlignmentAlgorithms#WatermanEggert', 'title': 'WatermanEggert', 'id': 'PairwiseLocalAlignmentAlgorithms#WatermanEggert'}],loc:'group_PairwiseLocalAlignmentAlgorithms.html',langEntity:'group'},
  {title:'AlignConfig',name:'AlignConfig',text:'',akas:'',subentries:[],loc:'class_AlignConfig.html',langEntity:'class'},
  {title:'AlignCols',name:'AlignCols',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'AlignCols#iter', 'title': 'iter', 'id': 'AlignCols#iter'}, {'type': 'interface_function', 'name': 'AlignCols#value', 'title': 'value', 'id': 'AlignCols#value'}],loc:'class_AlignCols.html',langEntity:'class'},
  {title:'AnchorGaps',name:'AnchorGaps',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'AnchorGaps::Gaps', 'title': 'Gaps', 'id': 'AnchorGaps::Gaps'}, {'type': 'interface_function', 'name': 'AnchorGaps#positionGapsToSeq', 'title': 'positionGapsToSeq', 'id': 'AnchorGaps#positionGapsToSeq'}, {'type': 'interface_function', 'name': 'AnchorGaps#positionSeqToGap', 'title': 'positionSeqToGap', 'id': 'AnchorGaps#positionSeqToGap'}],loc:'specialization_AnchorGaps.html',langEntity:'specialization'},
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  {title:'localAlignment',name:'localAlignment',text:'',akas:'',subentries:[],loc:'global_function_localAlignment.html',langEntity:'global_function'},
  {title:'localAlignmentScore',name:'localAlignmentScore',text:'',akas:'',subentries:[],loc:'global_function_localAlignmentScore.html',langEntity:'global_function'},
  {title:'Gaps Specialization Tags',name:'GapsSpecTag',text:'',akas:'',subentries:[{'type': 'grouped_tag', 'name': 'GapsSpecTag#AnchorGaps', 'title': 'AnchorGaps', 'id': 'GapsSpecTag#AnchorGaps'}, {'type': 'grouped_tag', 'name': 'GapsSpecTag#ArrayGaps', 'title': 'ArrayGaps', 'id': 'GapsSpecTag#ArrayGaps'}],loc:'group_GapsSpecTag.html',langEntity:'group'},
  {title:'Gap Direction Tags',name:'GapDirectionTags',text:'',akas:'',subentries:[{'type': 'grouped_tag', 'name': 'GapDirectionTags#LeftOfViewPos', 'title': 'LeftOfViewPos', 'id': 'GapDirectionTags#LeftOfViewPos'}, {'type': 'grouped_tag', 'name': 'GapDirectionTags#RightOfViewPos', 'title': 'RightOfViewPos', 'id': 'GapDirectionTags#RightOfViewPos'}],loc:'group_GapDirectionTags.html',langEntity:'group'},
  {title:'Gaps',name:'Gaps',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'Gaps#iter', 'title': 'iter', 'id': 'Gaps#iter'}, {'type': 'interface_function', 'name': 'Gaps#clearClipping', 'title': 'clearClipping', 'id': 'Gaps#clearClipping'}, {'type': 'interface_function', 'name': 'Gaps#clearGaps', 'title': 'clearGaps', 'id': 'Gaps#clearGaps'}, {'type': 'interface_function', 'name': 'Gaps#length', 'title': 'length', 'id': 'Gaps#length'}, {'type': 'interface_function', 'name': 'Gaps#unclippedLength', 'title': 'unclippedLength', 'id': 'Gaps#unclippedLength'}, {'type': 'interface_function', 'name': 'Gaps#toViewPosition', 'title': 'toViewPosition', 'id': 'Gaps#toViewPosition'}, {'type': 'interface_function', 'name': 'Gaps#toSourcePosition', 'title': 'toSourcePosition', 'id': 'Gaps#toSourcePosition'}, {'type': 'interface_function', 'name': 'Gaps#isGap', 'title': 'isGap', 'id': 'Gaps#isGap'}, {'type': 'interface_function', 'name': 'Gaps#isCharacer', 'title': 'isCharacer', 'id': 'Gaps#isCharacer'}, {'type': 'interface_function', 'name': 'Gaps#insertGaps', 'title': 'insertGaps', 'id': 'Gaps#insertGaps'}, {'type': 'interface_function', 'name': 'Gaps#insertGap', 'title': 'insertGap', 'id': 'Gaps#insertGap'}, {'type': 'interface_function', 'name': 'Gaps#removeGaps', 'title': 'removeGaps', 'id': 'Gaps#removeGaps'}, {'type': 'interface_function', 'name': 'Gaps#removeGap', 'title': 'removeGap', 'id': 'Gaps#removeGap'}, {'type': 'interface_function', 'name': 'Gaps#countGaps', 'title': 'countGaps', 'id': 'Gaps#countGaps'}, {'type': 'interface_function', 'name': 'Gaps#countLeadingGaps', 'title': 'countLeadingGaps', 'id': 'Gaps#countLeadingGaps'}, {'type': 'interface_function', 'name': 'Gaps#countTrailingGaps', 'title': 'countTrailingGaps', 'id': 'Gaps#countTrailingGaps'}, {'type': 'interface_function', 'name': 'Gaps#countGapOpens', 'title': 'countGapOpens', 'id': 'Gaps#countGapOpens'}, {'type': 'interface_function', 'name': 'Gaps#countGapExtensions', 'title': 'countGapExtensions', 'id': 'Gaps#countGapExtensions'}, {'type': 'interface_function', 'name': 'Gaps#countCharacters', 'title': 'countCharacters', 'id': 'Gaps#countCharacters'}, {'type': 'interface_function', 'name': 'Gaps#setClippedBeginPosition', 'title': 'setClippedBeginPosition', 'id': 'Gaps#setClippedBeginPosition'}, {'type': 'interface_function', 'name': 'Gaps#setClippedEndPosition', 'title': 'setClippedEndPosition', 'id': 'Gaps#setClippedEndPosition'}, {'type': 'interface_function', 'name': 'Gaps#clippedBeginPosition', 'title': 'clippedBeginPosition', 'id': 'Gaps#clippedBeginPosition'}, {'type': 'interface_function', 'name': 'Gaps#clippedEndPosition', 'title': 'clippedEndPosition', 'id': 'Gaps#clippedEndPosition'}, {'type': 'interface_function', 'name': 'Gaps#setBeginPosition', 'title': 'setBeginPosition', 'id': 'Gaps#setBeginPosition'}, {'type': 'interface_function', 'name': 'Gaps#setEndPosition', 'title': 'setEndPosition', 'id': 'Gaps#setEndPosition'}, {'type': 'interface_function', 'name': 'Gaps#beginPosition', 'title': 'beginPosition', 'id': 'Gaps#beginPosition'}, {'type': 'interface_function', 'name': 'Gaps#endPosition', 'title': 'endPosition', 'id': 'Gaps#endPosition'}, {'type': 'interface_function', 'name': 'Gaps#source', 'title': 'source', 'id': 'Gaps#source'}, {'type': 'interface_function', 'name': 'Gaps#assignSource', 'title': 'assignSource', 'id': 'Gaps#assignSource'}, {'type': 'interface_function', 'name': 'Gaps#copyGaps', 'title': 'copyGaps', 'id': 'Gaps#copyGaps'}, {'type': 'interface_function', 'name': 'Gaps#copyClipping', 'title': 'copyClipping', 'id': 'Gaps#copyClipping'}, {'type': 'interface_function', 'name': 'Gaps#clipSemiGlobal', 'title': 'clipSemiGlobal', 'id': 'Gaps#clipSemiGlobal'}],loc:'class_Gaps.html',langEntity:'class'},
  {title:'AlignColIterator',name:'AlignColIterator',text:'',akas:'',subentries:[],loc:'specialization_AlignColIterator.html',langEntity:'specialization'},
  {title:'TraceBack',name:'TraceBack',text:'',akas:'',subentries:[],loc:'global_typedef_TraceBack.html',langEntity:'global_typedef'},
  {title:'AlignTraceback',name:'AlignTraceback',text:'',akas:'',subentries:[{'type': 'member_variable', 'name': 'AlignTraceback::sizes', 'title': 'sizes', 'id': 'AlignTraceback::sizes'}, {'type': 'member_variable', 'name': 'AlignTraceback::tsv', 'title': 'tsv', 'id': 'AlignTraceback::tsv'}],loc:'class_AlignTraceback.html',langEntity:'class'},
  {title:'DPBandSwitch',name:'DPBandSwitch',text:'',akas:'',subentries:[{'type': 'grouped_tag', 'name': 'DPBandSwitch#BandOn', 'title': 'BandOn', 'id': 'DPBandSwitch#BandOn'}, {'type': 'grouped_tag', 'name': 'DPBandSwitch#BandOff', 'title': 'BandOff', 'id': 'DPBandSwitch#BandOff'}],loc:'group_DPBandSwitch.html',langEntity:'group'},
  {title:'DPBandConfig',name:'DPBandConfig',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'DPBandConfig::DPBandConfig', 'title': 'DPBandConfig', 'id': 'DPBandConfig::DPBandConfig'}, {'type': 'interface_metafunction', 'name': 'DPBandConfig#Position', 'title': 'Position', 'id': 'DPBandConfig#Position'}, {'type': 'interface_metafunction', 'name': 'DPBandConfig#Size', 'title': 'Size', 'id': 'DPBandConfig#Size'}, {'type': 'interface_function', 'name': 'DPBandConfig#setLowerDiagonal', 'title': 'setLowerDiagonal', 'id': 'DPBandConfig#setLowerDiagonal'}, {'type': 'interface_function', 'name': 'DPBandConfig#lowerDiagonal', 'title': 'lowerDiagonal', 'id': 'DPBandConfig#lowerDiagonal'}, {'type': 'interface_function', 'name': 'DPBandConfig#setUpperDiagonal', 'title': 'setUpperDiagonal', 'id': 'DPBandConfig#setUpperDiagonal'}, {'type': 'interface_function', 'name': 'DPBandConfig#upperDiagonal', 'title': 'upperDiagonal', 'id': 'DPBandConfig#upperDiagonal'}, {'type': 'interface_function', 'name': 'DPBandConfig#bandSize', 'title': 'bandSize', 'id': 'DPBandConfig#bandSize'}],loc:'class_DPBandConfig.html',langEntity:'class'},
  {title:'DPBand',name:'DPBand',text:'',akas:'',subentries:[],loc:'global_typedef_DPBand.html',langEntity:'global_typedef'},
  {title:'Map',name:'Map',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'Map#length', 'title': 'length', 'id': 'Map#length'}, {'type': 'interface_function', 'name': 'Map#mapValue', 'title': 'mapValue', 'id': 'Map#mapValue'}, {'type': 'interface_function', 'name': 'Map#find', 'title': 'find', 'id': 'Map#find'}, {'type': 'interface_function', 'name': 'Map#value', 'title': 'value', 'id': 'Map#value'}, {'type': 'interface_function', 'name': 'Map#cargo', 'title': 'cargo', 'id': 'Map#cargo'}, {'type': 'interface_function', 'name': 'Map#insert', 'title': 'insert', 'id': 'Map#insert'}, {'type': 'interface_function', 'name': 'Map#add', 'title': 'add', 'id': 'Map#add'}, {'type': 'interface_function', 'name': 'Map#erase', 'title': 'erase', 'id': 'Map#erase'}, {'type': 'interface_function', 'name': 'Map#eraseAll', 'title': 'eraseAll', 'id': 'Map#eraseAll'}, {'type': 'interface_function', 'name': 'Map#hasKey', 'title': 'hasKey', 'id': 'Map#hasKey'}, {'type': 'interface_metafunction', 'name': 'Map#MapValue', 'title': 'MapValue', 'id': 'Map#MapValue'}],loc:'class_Map.html',langEntity:'class'},
  {title:'VectorSet',name:'VectorSet',text:'',akas:'',subentries:[],loc:'specialization_VectorSet.html',langEntity:'specialization'},
  {title:'Skiplist',name:'Skiplist',text:'',akas:'',subentries:[],loc:'specialization_Skiplist.html',langEntity:'specialization'},
  {title:'Delta Type Tags',name:'DeltaTypeTags',text:'',akas:'',subentries:[{'type': 'grouped_tag', 'name': 'DeltaTypeTags#DeltaTypeSnp', 'title': 'DeltaTypeSnp', 'id': 'DeltaTypeTags#DeltaTypeSnp'}, {'type': 'grouped_tag', 'name': 'DeltaTypeTags#DeltaTypeDel', 'title': 'DeltaTypeDel', 'id': 'DeltaTypeTags#DeltaTypeDel'}, {'type': 'grouped_tag', 'name': 'DeltaTypeTags#DeltaTypeIns', 'title': 'DeltaTypeIns', 'id': 'DeltaTypeTags#DeltaTypeIns'}, {'type': 'grouped_tag', 'name': 'DeltaTypeTags#DeltaTypeSV', 'title': 'DeltaTypeSV', 'id': 'DeltaTypeTags#DeltaTypeSV'}],loc:'group_DeltaTypeTags.html',langEntity:'group'},
  {title:'DeltaType',name:'DeltaType',text:'',akas:'',subentries:[{'type': 'enum_value', 'name': 'DELTA_TYPE_SNP', 'title': 'DELTA_TYPE_SNP', 'id': 'DELTA_TYPE_SNP'}, {'type': 'enum_value', 'name': 'DELTA_TYPE_DEL', 'title': 'DELTA_TYPE_DEL', 'id': 'DELTA_TYPE_DEL'}, {'type': 'enum_value', 'name': 'DELTA_TYPE_INS', 'title': 'DELTA_TYPE_INS', 'id': 'DELTA_TYPE_INS'}, {'type': 'enum_value', 'name': 'DElTA_TYPE_INDEL', 'title': 'DElTA_TYPE_INDEL', 'id': 'DElTA_TYPE_INDEL'}],loc:'enum_DeltaType.html',langEntity:'enum'},
  {title:'DeltaMapIterator',name:'DeltaMapIterator',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'DeltaMapIterator#deltaType', 'title': 'deltaType', 'id': 'DeltaMapIterator#deltaType'}, {'type': 'interface_function', 'name': 'DeltaMapIterator#deltaValue', 'title': 'deltaValue', 'id': 'DeltaMapIterator#deltaValue'}],loc:'specialization_DeltaMapIterator.html',langEntity:'specialization'},
  {title:'DefaultJstConfig',name:'DefaultJstConfig',text:'',akas:'',subentries:[],loc:'class_DefaultJstConfig.html',langEntity:'class'},
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  {title:'Journaled String Tree',name:'JournaledStringTree',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'JournaledStringTree::JournaledStringTree', 'title': 'JournaledStringTree', 'id': 'JournaledStringTree::JournaledStringTree'}, {'type': 'interface_metafunction', 'name': 'JournaledStringTree#Spec', 'title': 'Spec', 'id': 'JournaledStringTree#Spec'}, {'type': 'interface_metafunction', 'name': 'JournaledStringTree#Size', 'title': 'Size', 'id': 'JournaledStringTree#Size'}, {'type': 'interface_metafunction', 'name': 'JournaledStringTree#Position', 'title': 'Position', 'id': 'JournaledStringTree#Position'}, {'type': 'interface_metafunction', 'name': 'JournaledStringTree#Host', 'title': 'Host', 'id': 'JournaledStringTree#Host'}, {'type': 'interface_function', 'name': 'JournaledStringTree#host', 'title': 'host', 'id': 'JournaledStringTree#host'}, {'type': 'interface_function', 'name': 'JournaledStringTree#setHost', 'title': 'setHost', 'id': 'JournaledStringTree#setHost'}, {'type': 'interface_function', 'name': 'JournaledStringTree#length', 'title': 'length', 'id': 'JournaledStringTree#length'}, {'type': 'interface_function', 'name': 'JournaledStringTree#resize', 'title': 'resize', 'id': 'JournaledStringTree#resize'}, {'type': 'interface_function', 'name': 'JournaledStringTree#clear', 'title': 'clear', 'id': 'JournaledStringTree#clear'}, {'type': 'interface_function', 'name': 'JournaledStringTree#insert', 'title': 'insert', 'id': 'JournaledStringTree#insert'}, {'type': 'interface_function', 'name': 'JournaledStringTree#erase', 'title': 'erase', 'id': 'JournaledStringTree#erase'}],loc:'class_JournaledStringTree.html',langEntity:'class'},
  {title:'SeedExtensionTags',name:'SeedExtensionTags',text:'',akas:'',subentries:[{'type': 'grouped_tag', 'name': 'SeedExtensionTags#MatchExtend', 'title': 'MatchExtend', 'id': 'SeedExtensionTags#MatchExtend'}, {'type': 'grouped_tag', 'name': 'SeedExtensionTags#UnGappedXDrop', 'title': 'UnGappedXDrop', 'id': 'SeedExtensionTags#UnGappedXDrop'}, {'type': 'grouped_tag', 'name': 'SeedExtensionTags#GappedXDrop', 'title': 'GappedXDrop', 'id': 'SeedExtensionTags#GappedXDrop'}],loc:'group_SeedExtensionTags.html',langEntity:'group'},
  {title:'ExtensionDirection',name:'ExtensionDirection',text:'',akas:'',subentries:[{'type': 'enum_value', 'name': 'EXTEND_NONE = 0', 'title': 'EXTEND_NONE = 0', 'id': 'EXTEND_NONE = 0'}, {'type': 'enum_value', 'name': 'EXTEND_LEFT = 1', 'title': 'EXTEND_LEFT = 1', 'id': 'EXTEND_LEFT = 1'}, {'type': 'enum_value', 'name': 'EXTEND_RIGHT = 2', 'title': 'EXTEND_RIGHT = 2', 'id': 'EXTEND_RIGHT = 2'}, {'type': 'enum_value', 'name': 'EXTEND_BOTH = 3', 'title': 'EXTEND_BOTH = 3', 'id': 'EXTEND_BOTH = 3'}],loc:'enum_ExtensionDirection.html',langEntity:'enum'},
  {title:'SimpleSeed',name:'SimpleSeed',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'SimpleSeed::Seed', 'title': 'Seed', 'id': 'SimpleSeed::Seed'}],loc:'specialization_SimpleSeed.html',langEntity:'specialization'},
  {title:'bandedChainAlignment',name:'bandedChainAlignment',text:'',akas:'',subentries:[],loc:'global_function_bandedChainAlignment.html',langEntity:'global_function'},
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  {title:'Seed',name:'Seed',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'Seed#extendSeed', 'title': 'extendSeed', 'id': 'Seed#extendSeed'}, {'type': 'interface_function', 'name': 'Seed#beginPositionH', 'title': 'beginPositionH', 'id': 'Seed#beginPositionH'}, {'type': 'interface_function', 'name': 'Seed#endPositionH', 'title': 'endPositionH', 'id': 'Seed#endPositionH'}, {'type': 'interface_function', 'name': 'Seed#setBeginPositionH', 'title': 'setBeginPositionH', 'id': 'Seed#setBeginPositionH'}, {'type': 'interface_function', 'name': 'Seed#setEndPositionH', 'title': 'setEndPositionH', 'id': 'Seed#setEndPositionH'}, {'type': 'interface_function', 'name': 'Seed#beginPositionV', 'title': 'beginPositionV', 'id': 'Seed#beginPositionV'}, {'type': 'interface_function', 'name': 'Seed#endPositionV', 'title': 'endPositionV', 'id': 'Seed#endPositionV'}, {'type': 'interface_function', 'name': 'Seed#setBeginPositionV', 'title': 'setBeginPositionV', 'id': 'Seed#setBeginPositionV'}, {'type': 'interface_function', 'name': 'Seed#setEndPositionV', 'title': 'setEndPositionV', 'id': 'Seed#setEndPositionV'}, {'type': 'interface_function', 'name': 'Seed#lowerDiagonal', 'title': 'lowerDiagonal', 'id': 'Seed#lowerDiagonal'}, {'type': 'interface_function', 'name': 'Seed#setLowerDiagonal', 'title': 'setLowerDiagonal', 'id': 'Seed#setLowerDiagonal'}, {'type': 'interface_function', 'name': 'Seed#upperDiagonal', 'title': 'upperDiagonal', 'id': 'Seed#upperDiagonal'}, {'type': 'interface_function', 'name': 'Seed#setUpperDiagonal', 'title': 'setUpperDiagonal', 'id': 'Seed#setUpperDiagonal'}, {'type': 'interface_function', 'name': 'Seed#seedSize', 'title': 'seedSize', 'id': 'Seed#seedSize'}, {'type': 'interface_function', 'name': 'Seed#beginDiagonal', 'title': 'beginDiagonal', 'id': 'Seed#beginDiagonal'}, {'type': 'interface_function', 'name': 'Seed#endDiagonal', 'title': 'endDiagonal', 'id': 'Seed#endDiagonal'}, {'type': 'interface_function', 'name': 'Seed#score', 'title': 'score', 'id': 'Seed#score'}, {'type': 'interface_function', 'name': 'Seed#setScore', 'title': 'setScore', 'id': 'Seed#setScore'}, {'type': 'interface_metafunction', 'name': 'Seed#Position', 'title': 'Position', 'id': 'Seed#Position'}, {'type': 'interface_metafunction', 'name': 'Seed#Size', 'title': 'Size', 'id': 'Seed#Size'}, {'type': 'interface_metafunction', 'name': 'Seed#Diagonal', 'title': 'Diagonal', 'id': 'Seed#Diagonal'}, {'type': 'interface_metafunction', 'name': 'Seed#SeedScore', 'title': 'SeedScore', 'id': 'Seed#SeedScore'}],loc:'class_Seed.html',langEntity:'class'},
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  {title:'chainSeedsGlobally',name:'chainSeedsGlobally',text:'',akas:'',subentries:[],loc:'global_function_chainSeedsGlobally.html',langEntity:'global_function'},
  {title:'ChainedSeed',name:'ChainedSeed',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'ChainedSeed::Seed', 'title': 'Seed', 'id': 'ChainedSeed::Seed'}, {'type': 'interface_metafunction', 'name': 'ChainedSeed#Value', 'title': 'Value', 'id': 'ChainedSeed#Value'}, {'type': 'interface_metafunction', 'name': 'ChainedSeed#Reference', 'title': 'Reference', 'id': 'ChainedSeed#Reference'}, {'type': 'interface_metafunction', 'name': 'ChainedSeed#Iterator', 'title': 'Iterator', 'id': 'ChainedSeed#Iterator'}, {'type': 'interface_function', 'name': 'ChainedSeed#length', 'title': 'length', 'id': 'ChainedSeed#length'}, {'type': 'interface_function', 'name': 'ChainedSeed#appendDiagonal', 'title': 'appendDiagonal', 'id': 'ChainedSeed#appendDiagonal'}, {'type': 'interface_function', 'name': 'ChainedSeed#truncateDiagonals', 'title': 'truncateDiagonals', 'id': 'ChainedSeed#truncateDiagonals'}, {'type': 'interface_function', 'name': 'ChainedSeed#begin', 'title': 'begin', 'id': 'ChainedSeed#begin'}, {'type': 'interface_function', 'name': 'ChainedSeed#end', 'title': 'end', 'id': 'ChainedSeed#end'}, {'type': 'interface_function', 'name': 'ChainedSeed#front', 'title': 'front', 'id': 'ChainedSeed#front'}, {'type': 'interface_function', 'name': 'ChainedSeed#back', 'title': 'back', 'id': 'ChainedSeed#back'}],loc:'specialization_ChainedSeed.html',langEntity:'specialization'},
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  {title:'SeedSet',name:'SeedSet',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'SeedSet#addSeed', 'title': 'addSeed', 'id': 'SeedSet#addSeed'}, {'type': 'interface_function', 'name': 'SeedSet#minScore', 'title': 'minScore', 'id': 'SeedSet#minScore'}, {'type': 'interface_function', 'name': 'SeedSet#setMinScore', 'title': 'setMinScore', 'id': 'SeedSet#setMinScore'}, {'type': 'interface_function', 'name': 'SeedSet#clear', 'title': 'clear', 'id': 'SeedSet#clear'}],loc:'class_SeedSet.html',langEntity:'class'},
  {title:'Graph',name:'Graph',text:'',akas:'',subentries:[{'type': 'interface_metafunction', 'name': 'Graph#Size', 'title': 'Size', 'id': 'Graph#Size'}, {'type': 'interface_metafunction', 'name': 'Graph#EdgeDescriptor', 'title': 'EdgeDescriptor', 'id': 'Graph#EdgeDescriptor'}, {'type': 'interface_metafunction', 'name': 'Graph#Cargo', 'title': 'Cargo', 'id': 'Graph#Cargo'}, {'type': 'interface_metafunction', 'name': 'Graph#EdgeType', 'title': 'EdgeType', 'id': 'Graph#EdgeType'}, {'type': 'interface_metafunction', 'name': 'Graph#EdgeIdHandler', 'title': 'EdgeIdHandler', 'id': 'Graph#EdgeIdHandler'}, {'type': 'interface_metafunction', 'name': 'Graph#VertexIdHandler', 'title': 'VertexIdHandler', 'id': 'Graph#VertexIdHandler'}, {'type': 'interface_function', 'name': 'Graph#transpose', 'title': 'transpose', 'id': 'Graph#transpose'}, {'type': 'interface_function', 'name': 'Graph#numEdges', 'title': 'numEdges', 'id': 'Graph#numEdges'}, {'type': 'interface_function', 'name': 'Graph#numVertices', 'title': 'numVertices', 'id': 'Graph#numVertices'}, {'type': 'interface_function', 'name': 'Graph#empty', 'title': 'empty', 'id': 'Graph#empty'}, {'type': 'interface_function', 'name': 'Graph#clearEdges', 'title': 'clearEdges', 'id': 'Graph#clearEdges'}, {'type': 'interface_function', 'name': 'Graph#clear', 'title': 'clear', 'id': 'Graph#clear'}, {'type': 'interface_function', 'name': 'Graph#outDegree', 'title': 'outDegree', 'id': 'Graph#outDegree'}, {'type': 'interface_function', 'name': 'Graph#inDegree', 'title': 'inDegree', 'id': 'Graph#inDegree'}, {'type': 'interface_function', 'name': 'Graph#degree', 'title': 'degree', 'id': 'Graph#degree'}, {'type': 'interface_function', 'name': 'Graph#addVertex', 'title': 'addVertex', 'id': 'Graph#addVertex'}, {'type': 'interface_function', 'name': 'Graph#removeVertex', 'title': 'removeVertex', 'id': 'Graph#removeVertex'}, {'type': 'interface_function', 'name': 'Graph#addEdge', 'title': 'addEdge', 'id': 'Graph#addEdge'}, {'type': 'interface_function', 'name': 'Graph#removeEdge', 'title': 'removeEdge', 'id': 'Graph#removeEdge'}, {'type': 'interface_function', 'name': 'Graph#removeInEdges', 'title': 'removeInEdges', 'id': 'Graph#removeInEdges'}, {'type': 'interface_function', 'name': 'Graph#removeOutEdges', 'title': 'removeOutEdges', 'id': 'Graph#removeOutEdges'}, {'type': 'interface_function', 'name': 'Graph#targetVertex', 'title': 'targetVertex', 'id': 'Graph#targetVertex'}, {'type': 'interface_function', 'name': 'Graph#sourceVertex', 'title': 'sourceVertex', 'id': 'Graph#sourceVertex'}, {'type': 'interface_function', 'name': 'Graph#getAdjacencyMatrix', 'title': 'getAdjacencyMatrix', 'id': 'Graph#getAdjacencyMatrix'}, {'type': 'interface_function', 'name': 'Graph#getVertexAdjacencyVector', 'title': 'getVertexAdjacencyVector', 'id': 'Graph#getVertexAdjacencyVector'}, {'type': 'interface_function', 'name': 'Graph#findEdge', 'title': 'findEdge', 'id': 'Graph#findEdge'}, {'type': 'interface_function', 'name': 'Graph#clearVertices', 'title': 'clearVertices', 'id': 'Graph#clearVertices'}, {'type': 'interface_function', 'name': 'Graph#getNil', 'title': 'getNil', 'id': 'Graph#getNil'}, {'type': 'interface_function', 'name': 'Graph#addEdges', 'title': 'addEdges', 'id': 'Graph#addEdges'}, {'type': 'interface_function', 'name': 'Graph#resizeVertexMap', 'title': 'resizeVertexMap', 'id': 'Graph#resizeVertexMap'}, {'type': 'interface_function', 'name': 'Graph#resizeEdgeMap', 'title': 'resizeEdgeMap', 'id': 'Graph#resizeEdgeMap'}, {'type': 'interface_function', 'name': 'Graph#assignVertexMap', 'title': 'assignVertexMap', 'id': 'Graph#assignVertexMap'}, {'type': 'interface_function', 'name': 'Graph#assignEdgeMap', 'title': 'assignEdgeMap', 'id': 'Graph#assignEdgeMap'}, {'type': 'interface_function', 'name': 'Graph#writeRecords', 'title': 'writeRecords', 'id': 'Graph#writeRecords'}],loc:'class_Graph.html',langEntity:'class'},
  {title:'AdjacencyIterator',name:'AdjacencyIterator',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'AdjacencyIterator::AdjacencyIterator', 'title': 'AdjacencyIterator', 'id': 'AdjacencyIterator::AdjacencyIterator'}],loc:'specialization_AdjacencyIterator.html',langEntity:'specialization'},
  {title:'Automaton',name:'Automaton',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'Automaton#createRoot', 'title': 'createRoot', 'id': 'Automaton#createRoot'}, {'type': 'interface_function', 'name': 'Automaton#assignRoot', 'title': 'assignRoot', 'id': 'Automaton#assignRoot'}, {'type': 'interface_function', 'name': 'Automaton#root', 'title': 'root', 'id': 'Automaton#root'}, {'type': 'interface_function', 'name': 'Automaton#getRoot', 'title': 'getRoot', 'id': 'Automaton#getRoot'}, {'type': 'interface_function', 'name': 'Automaton#isRoot', 'title': 'isRoot', 'id': 'Automaton#isRoot'}, {'type': 'interface_function', 'name': 'Automaton#getSuccessor', 'title': 'getSuccessor', 'id': 'Automaton#getSuccessor'}, {'type': 'interface_function', 'name': 'Automaton#parseString', 'title': 'parseString', 'id': 'Automaton#parseString'}, {'type': 'interface_function', 'name': 'Automaton#canParseString', 'title': 'canParseString', 'id': 'Automaton#canParseString'}, {'type': 'interface_function', 'name': 'Automaton#createTrie', 'title': 'createTrie', 'id': 'Automaton#createTrie'}, {'type': 'interface_function', 'name': 'Automaton#createTrieOnReverse', 'title': 'createTrieOnReverse', 'id': 'Automaton#createTrieOnReverse'}, {'type': 'interface_function', 'name': 'Automaton#createSuffixTrie', 'title': 'createSuffixTrie', 'id': 'Automaton#createSuffixTrie'}, {'type': 'interface_function', 'name': 'Automaton#createOracle', 'title': 'createOracle', 'id': 'Automaton#createOracle'}, {'type': 'interface_function', 'name': 'Automaton#createOracleOnReverse', 'title': 'createOracleOnReverse', 'id': 'Automaton#createOracleOnReverse'}],loc:'specialization_Automaton.html',langEntity:'specialization'},
  {title:'OutEdgeIterator',name:'OutEdgeIterator',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'OutEdgeIterator::OutEdgeIterator', 'title': 'OutEdgeIterator', 'id': 'OutEdgeIterator::OutEdgeIterator'}, {'type': 'interface_function', 'name': 'OutEdgeIterator#label', 'title': 'label', 'id': 'OutEdgeIterator#label'}],loc:'specialization_OutEdgeIterator.html',langEntity:'specialization'},
  {title:'DirectedGraph',name:'DirectedGraph',text:'',akas:'',subentries:[],loc:'specialization_DirectedGraph.html',langEntity:'specialization'},
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  {title:'InternalPropertyMap',name:'InternalPropertyMap',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'InternalPropertyMap#assignProperty:', 'title': 'assignProperty:', 'id': 'InternalPropertyMap#assignProperty:'}, {'type': 'interface_function', 'name': 'InternalPropertyMap#property:', 'title': 'property:', 'id': 'InternalPropertyMap#property:'}, {'type': 'interface_function', 'name': 'InternalPropertyMap#getProperty', 'title': 'getProperty', 'id': 'InternalPropertyMap#getProperty'}],loc:'class_InternalPropertyMap.html',langEntity:'class'},
  {title:'InternalPointerPropertyMap',name:'InternalPointerPropertyMap',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'InternalPointerPropertyMap#assignProperty:', 'title': 'assignProperty:', 'id': 'InternalPointerPropertyMap#assignProperty:'}, {'type': 'interface_function', 'name': 'InternalPointerPropertyMap#property:', 'title': 'property:', 'id': 'InternalPointerPropertyMap#property:'}, {'type': 'interface_function', 'name': 'InternalPointerPropertyMap#getProperty', 'title': 'getProperty', 'id': 'InternalPointerPropertyMap#getProperty'}],loc:'class_InternalPointerPropertyMap.html',langEntity:'class'},
  {title:'IdManager',name:'IdManager',text:'',akas:'',subentries:[{'type': 'interface_metafunction', 'name': 'IdManager#Value', 'title': 'Value', 'id': 'IdManager#Value'}, {'type': 'interface_metafunction', 'name': 'IdManager#Spec', 'title': 'Spec', 'id': 'IdManager#Spec'}, {'type': 'interface_function', 'name': 'IdManager#obatinId', 'title': 'obatinId', 'id': 'IdManager#obatinId'}, {'type': 'interface_function', 'name': 'IdManager#releaseId', 'title': 'releaseId', 'id': 'IdManager#releaseId'}, {'type': 'interface_function', 'name': 'IdManager#releaseAll', 'title': 'releaseAll', 'id': 'IdManager#releaseAll'}, {'type': 'interface_function', 'name': 'IdManager#getIdUpperBound', 'title': 'getIdUpperBound', 'id': 'IdManager#getIdUpperBound'}, {'type': 'interface_function', 'name': 'IdManager#getIdLowerBound', 'title': 'getIdLowerBound', 'id': 'IdManager#getIdLowerBound'}, {'type': 'interface_function', 'name': 'IdManager#idCount', 'title': 'idCount', 'id': 'IdManager#idCount'}, {'type': 'interface_function', 'name': 'IdManager#idInUse', 'title': 'idInUse', 'id': 'IdManager#idInUse'}],loc:'class_IdManager.html',langEntity:'class'},
  {title:'CountingIdManager',name:'CountingIdManager',text:'',akas:'',subentries:[],loc:'specialization_CountingIdManager.html',langEntity:'specialization'},
  {title:'Tree',name:'Tree',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'Tree#assignRoot', 'title': 'assignRoot', 'id': 'Tree#assignRoot'}, {'type': 'interface_function', 'name': 'Tree#createRoot', 'title': 'createRoot', 'id': 'Tree#createRoot'}, {'type': 'interface_function', 'name': 'Tree#root', 'title': 'root', 'id': 'Tree#root'}, {'type': 'interface_function', 'name': 'Tree#getRoot', 'title': 'getRoot', 'id': 'Tree#getRoot'}, {'type': 'interface_function', 'name': 'Tree#isRoot', 'title': 'isRoot', 'id': 'Tree#isRoot'}, {'type': 'interface_function', 'name': 'Tree#isLeaf', 'title': 'isLeaf', 'id': 'Tree#isLeaf'}, {'type': 'interface_function', 'name': 'Tree#numTreeEdges', 'title': 'numTreeEdges', 'id': 'Tree#numTreeEdges'}, {'type': 'interface_function', 'name': 'Tree#numChildren', 'title': 'numChildren', 'id': 'Tree#numChildren'}, {'type': 'interface_function', 'name': 'Tree#addChild', 'title': 'addChild', 'id': 'Tree#addChild'}, {'type': 'interface_function', 'name': 'Tree#removeChild', 'title': 'removeChild', 'id': 'Tree#removeChild'}, {'type': 'interface_function', 'name': 'Tree#removeAllChildren', 'title': 'removeAllChildren', 'id': 'Tree#removeAllChildren'}, {'type': 'interface_function', 'name': 'Tree#childVertex', 'title': 'childVertex', 'id': 'Tree#childVertex'}, {'type': 'interface_function', 'name': 'Tree#parentVertex', 'title': 'parentVertex', 'id': 'Tree#parentVertex'}, {'type': 'interface_function', 'name': 'Tree#collectLeaves', 'title': 'collectLeaves', 'id': 'Tree#collectLeaves'}],loc:'specialization_Tree.html',langEntity:'specialization'},
  {title:'WordGraph',name:'WordGraph',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'WordGraph#getSuccessor', 'title': 'getSuccessor', 'id': 'WordGraph#getSuccessor'}, {'type': 'interface_function', 'name': 'WordGraph#parseString', 'title': 'parseString', 'id': 'WordGraph#parseString'}, {'type': 'interface_function', 'name': 'WordGraph#canParseString', 'title': 'canParseString', 'id': 'WordGraph#canParseString'}],loc:'specialization_WordGraph.html',langEntity:'specialization'},
  {title:'GraphOverAlphabetConcept',name:'GraphOverAlphabetConcept',text:'',akas:'',subentries:[{'type': 'interface_metafunction', 'name': 'GraphOverAlphabetConcept#Alphabet', 'title': 'Alphabet', 'id': 'GraphOverAlphabetConcept#Alphabet'}],loc:'concept_GraphOverAlphabetConcept.html',langEntity:'concept'},
  {title:'Graph Iterator Tags',name:'GraphIteratorTags',text:'',akas:'',subentries:[{'type': 'grouped_tag', 'name': 'GraphIteratorTags#VertexIterator', 'title': 'VertexIterator', 'id': 'GraphIteratorTags#VertexIterator'}, {'type': 'grouped_tag', 'name': 'GraphIteratorTags#EdgeIterator', 'title': 'EdgeIterator', 'id': 'GraphIteratorTags#EdgeIterator'}, {'type': 'grouped_tag', 'name': 'GraphIteratorTags#OutEdgeIterator', 'title': 'OutEdgeIterator', 'id': 'GraphIteratorTags#OutEdgeIterator'}, {'type': 'grouped_tag', 'name': 'GraphIteratorTags#AdjacencyIterator', 'title': 'AdjacencyIterator', 'id': 'GraphIteratorTags#AdjacencyIterator'}, {'type': 'grouped_tag', 'name': 'GraphIteratorTags#BfsIterator', 'title': 'BfsIterator', 'id': 'GraphIteratorTags#BfsIterator'}, {'type': 'grouped_tag', 'name': 'GraphIteratorTags#DfsPreorder', 'title': 'DfsPreorder', 'id': 'GraphIteratorTags#DfsPreorder'}],loc:'group_GraphIteratorTags.html',langEntity:'group'},
  {title:'BfsIterator',name:'BfsIterator',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'BfsIterator::BfsIterator', 'title': 'BfsIterator', 'id': 'BfsIterator::BfsIterator'}],loc:'specialization_BfsIterator.html',langEntity:'specialization'},
  {title:'DfsPreorderIterator',name:'DfsPreorderIterator',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'DfsPreorderIterator::DfsPreorderIterator', 'title': 'DfsPreorderIterator', 'id': 'DfsPreorderIterator::DfsPreorderIterator'}],loc:'specialization_DfsPreorderIterator.html',langEntity:'specialization'},
  {title:'EdgeStump',name:'EdgeStump',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'EdgeStump#getCargo', 'title': 'getCargo', 'id': 'EdgeStump#getCargo'}, {'type': 'interface_function', 'name': 'EdgeStump#cargo', 'title': 'cargo', 'id': 'EdgeStump#cargo'}, {'type': 'interface_function', 'name': 'EdgeStump#assignCargo', 'title': 'assignCargo', 'id': 'EdgeStump#assignCargo'}, {'type': 'interface_function', 'name': 'EdgeStump#assignTarget', 'title': 'assignTarget', 'id': 'EdgeStump#assignTarget'}, {'type': 'interface_function', 'name': 'EdgeStump#target', 'title': 'target', 'id': 'EdgeStump#target'}, {'type': 'interface_function', 'name': 'EdgeStump#getTarget', 'title': 'getTarget', 'id': 'EdgeStump#getTarget'}, {'type': 'interface_function', 'name': 'EdgeStump#assignSource', 'title': 'assignSource', 'id': 'EdgeStump#assignSource'}, {'type': 'interface_function', 'name': 'EdgeStump#source', 'title': 'source', 'id': 'EdgeStump#source'}, {'type': 'interface_function', 'name': 'EdgeStump#getSource', 'title': 'getSource', 'id': 'EdgeStump#getSource'}, {'type': 'interface_function', 'name': 'EdgeStump#assignNextT', 'title': 'assignNextT', 'id': 'EdgeStump#assignNextT'}, {'type': 'interface_function', 'name': 'EdgeStump#nextT', 'title': 'nextT', 'id': 'EdgeStump#nextT'}, {'type': 'interface_function', 'name': 'EdgeStump#getNextT', 'title': 'getNextT', 'id': 'EdgeStump#getNextT'}, {'type': 'interface_function', 'name': 'EdgeStump#assignNextS', 'title': 'assignNextS', 'id': 'EdgeStump#assignNextS'}, {'type': 'interface_function', 'name': 'EdgeStump#nextS', 'title': 'nextS', 'id': 'EdgeStump#nextS'}, {'type': 'interface_function', 'name': 'EdgeStump#getNextS', 'title': 'getNextS', 'id': 'EdgeStump#getNextS'}],loc:'class_EdgeStump.html',langEntity:'class'},
  {title:'EdgeIterator',name:'EdgeIterator',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'EdgeIterator#label', 'title': 'label', 'id': 'EdgeIterator#label'}, {'type': 'member_function', 'name': 'EdgeIterator::EdgeIterator', 'title': 'EdgeIterator', 'id': 'EdgeIterator::EdgeIterator'}],loc:'specialization_EdgeIterator.html',langEntity:'specialization'},
  {title:'VertexIterator',name:'VertexIterator',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'VertexIterator::VertexIterator', 'title': 'VertexIterator', 'id': 'VertexIterator::VertexIterator'}],loc:'specialization_VertexIterator.html',langEntity:'specialization'},
  {title:'BamTagsDict',name:'BamTagsDict',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'BamTagsDict::BamTagsDict', 'title': 'BamTagsDict', 'id': 'BamTagsDict::BamTagsDict'}, {'type': 'interface_function', 'name': 'BamTagsDict#hasIndex', 'title': 'hasIndex', 'id': 'BamTagsDict#hasIndex'}, {'type': 'interface_function', 'name': 'BamTagsDict#buildIndex', 'title': 'buildIndex', 'id': 'BamTagsDict#buildIndex'}, {'type': 'interface_function', 'name': 'BamTagsDict#length', 'title': 'length', 'id': 'BamTagsDict#length'}, {'type': 'interface_function', 'name': 'BamTagsDict#getTagType', 'title': 'getTagType', 'id': 'BamTagsDict#getTagType'}, {'type': 'interface_function', 'name': 'BamTagsDict#getTagKey', 'title': 'getTagKey', 'id': 'BamTagsDict#getTagKey'}, {'type': 'interface_function', 'name': 'BamTagsDict#findTagKey', 'title': 'findTagKey', 'id': 'BamTagsDict#findTagKey'}, {'type': 'interface_function', 'name': 'BamTagsDict#extractTagValue', 'title': 'extractTagValue', 'id': 'BamTagsDict#extractTagValue'}, {'type': 'interface_function', 'name': 'BamTagsDict#setTagValue', 'title': 'setTagValue', 'id': 'BamTagsDict#setTagValue'}, {'type': 'interface_function', 'name': 'BamTagsDict#appendTagValue', 'title': 'appendTagValue', 'id': 'BamTagsDict#appendTagValue'}, {'type': 'interface_function', 'name': 'BamTagsDict#eraseTag', 'title': 'eraseTag', 'id': 'BamTagsDict#eraseTag'}, {'type': 'interface_function', 'name': 'BamTagsDict#tagsToBamRecord', 'title': 'tagsToBamRecord', 'id': 'BamTagsDict#tagsToBamRecord'}],loc:'class_BamTagsDict.html',langEntity:'class'},
  {title:'getBamTypeSize',name:'getBamTypeSize',text:'',akas:'',subentries:[],loc:'global_function_getBamTypeSize.html',langEntity:'global_function'},
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  {title:'BamSortOrder',name:'BamSortOrder',text:'',akas:'',subentries:[{'type': 'enum_value', 'name': 'BAM_SORT_UNKNOWN = 0', 'title': 'BAM_SORT_UNKNOWN = 0', 'id': 'BAM_SORT_UNKNOWN = 0'}, {'type': 'enum_value', 'name': 'BAM_SORT_UNSORTED = 1', 'title': 'BAM_SORT_UNSORTED = 1', 'id': 'BAM_SORT_UNSORTED = 1'}, {'type': 'enum_value', 'name': 'BAM_SORT_QUERYNAME = 2', 'title': 'BAM_SORT_QUERYNAME = 2', 'id': 'BAM_SORT_QUERYNAME = 2'}, {'type': 'enum_value', 'name': 'BAM_SORT_COORDINATE = 3', 'title': 'BAM_SORT_COORDINATE = 3', 'id': 'BAM_SORT_COORDINATE = 3'}],loc:'enum_BamSortOrder.html',langEntity:'enum'},
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  {title:'BamFileIn',name:'BamFileIn',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'BamFileIn#viewRecords', 'title': 'viewRecords', 'id': 'BamFileIn#viewRecords'}, {'type': 'interface_function', 'name': 'BamFileIn#jumpToRegion', 'title': 'jumpToRegion', 'id': 'BamFileIn#jumpToRegion'}, {'type': 'interface_function', 'name': 'BamFileIn#jumpToOrphans', 'title': 'jumpToOrphans', 'id': 'BamFileIn#jumpToOrphans'}],loc:'specialization_BamFileIn.html',langEntity:'specialization'},
  {title:'BamFileOut',name:'BamFileOut',text:'',akas:'',subentries:[],loc:'specialization_BamFileOut.html',langEntity:'specialization'},
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  {title:'BamIndex',name:'BamIndex',text:'',akas:'',subentries:[{'type': 'interface_function', 'name': 'BamIndex#getUnalignedCount', 'title': 'getUnalignedCount', 'id': 'BamIndex#getUnalignedCount'}, {'type': 'interface_function', 'name': 'BamIndex#open', 'title': 'open', 'id': 'BamIndex#open'}, {'type': 'interface_function', 'name': 'BamIndex#save', 'title': 'save', 'id': 'BamIndex#save'}],loc:'class_BamIndex.html',langEntity:'class'},
  {title:'BaiBamIndex',name:'BaiBamIndex',text:'',akas:'',subentries:[{'type': 'member_function', 'name': 'BaiBamIndex::BamIndex', 'title': 'BamIndex', 'id': 'BaiBamIndex::BamIndex'}],loc:'specialization_BaiBamIndex.html',langEntity:'specialization'},
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  {title:'Levels',name:'Levels',text:'',akas:'',subentries:[],loc:'specialization_Levels.html',langEntity:'specialization'},
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