# Summary statistics, used for scaling the plots.
SS	Number of files:	4
SS	Number of amplicons:	2
SS	Reference length:	800
SS	End of summary
# Amplicon locations from BED file.
# LEFT/RIGHT are <start>-<end> format and comma-separated for alt-primers.
#
# AMPLICON	NUMBER	LEFT	RIGHT
AMPLICON	1	31-54	386-410
AMPLICON	2	321-342	705-726
# Summary stats.
# Use 'grep ^FSS | cut -f 2-' to extract this part.
FSS	1_hard_clipped.expected	raw total sequences:	8
FSS	1_hard_clipped.expected	filtered sequences:	0
FSS	1_hard_clipped.expected	failed primer match:	2
FSS	1_hard_clipped.expected	matching sequences:	6
FSS	1_hard_clipped.expected	consensus depth count < 1 and >= 1:	132	517
FSS	1_hard_clipped.expected	consensus depth count < 20 and >= 20:	649	0
FSS	1_hard_clipped.expected	consensus depth count < 100 and >= 100:	649	0
# Absolute matching read counts per amplicon.
# Use 'grep ^FREADS | cut -f 2-' to extract this part.
FREADS	1_hard_clipped.expected	5	1
FVDEPTH	1_hard_clipped.expected	2	0
# Read percentage of distribution between amplicons.
# Use 'grep ^FRPERC | cut -f 2-' to extract this part.
FRPERC	1_hard_clipped.expected	83.333	16.667
# Read depth per amplicon.
# Use 'grep ^FDEPTH | cut -f 2-' to extract this part.
FDEPTH	1_hard_clipped.expected	2.8	0.5
# Percentage coverage per amplicon
# Use 'grep ^FPCOV | cut -f 2-' to extract this part.
FPCOV-1	1_hard_clipped.expected	100.00	51.80
FPCOV-20	1_hard_clipped.expected	0.00	0.00
FPCOV-100	1_hard_clipped.expected	0.00	0.00
# Depth per reference base for ALL data.
# Use 'grep ^FDP_ALL | cut -f 2-' to extract this part.
FDP_ALL	1_hard_clipped.expected	0,54	2,77	3,254	0,25	1,294	0,96
# Depth per reference base for full-length valid amplicon data.
# Use 'grep ^FDP_VALID | cut -f 2-' to extract this part.
FDP_VALID	1_hard_clipped.expected	0,54	2,331	0,415
# Distribution of aligned template coordinates.
# Use 'grep ^FTCOORD | cut -f 2-' to extract this part.
FTCOORD	1_hard_clipped.expected	0
FTCOORD	1_hard_clipped.expected	1
FTCOORD	1_hard_clipped.expected	2
# Classification of amplicon status.  Columns are
# number with both primers from this amplicon, number with
# primers from different amplicon, and number with a position
# not matching any valid amplicon primer site
# Use 'grep ^FAMP | cut -f 2-' to extract this part.
FAMP	1_hard_clipped.expected	0	2	0	2
FAMP	1_hard_clipped.expected	1	2	0	1
FAMP	1_hard_clipped.expected	2	0	0	1
# Summary stats.
# Use 'grep ^FSS | cut -f 2-' to extract this part.
FSS	1_soft_clipped.expected	raw total sequences:	8
FSS	1_soft_clipped.expected	filtered sequences:	0
FSS	1_soft_clipped.expected	failed primer match:	2
FSS	1_soft_clipped.expected	matching sequences:	6
FSS	1_soft_clipped.expected	consensus depth count < 1 and >= 1:	132	517
FSS	1_soft_clipped.expected	consensus depth count < 20 and >= 20:	649	0
FSS	1_soft_clipped.expected	consensus depth count < 100 and >= 100:	649	0
# Absolute matching read counts per amplicon.
# Use 'grep ^FREADS | cut -f 2-' to extract this part.
FREADS	1_soft_clipped.expected	5	1
FVDEPTH	1_soft_clipped.expected	2	0
# Read percentage of distribution between amplicons.
# Use 'grep ^FRPERC | cut -f 2-' to extract this part.
FRPERC	1_soft_clipped.expected	83.333	16.667
# Read depth per amplicon.
# Use 'grep ^FDEPTH | cut -f 2-' to extract this part.
FDEPTH	1_soft_clipped.expected	2.8	0.5
# Percentage coverage per amplicon
# Use 'grep ^FPCOV | cut -f 2-' to extract this part.
FPCOV-1	1_soft_clipped.expected	100.00	51.80
FPCOV-20	1_soft_clipped.expected	0.00	0.00
FPCOV-100	1_soft_clipped.expected	0.00	0.00
# Depth per reference base for ALL data.
# Use 'grep ^FDP_ALL | cut -f 2-' to extract this part.
FDP_ALL	1_soft_clipped.expected	0,54	2,77	3,254	0,25	1,294	0,96
# Depth per reference base for full-length valid amplicon data.
# Use 'grep ^FDP_VALID | cut -f 2-' to extract this part.
FDP_VALID	1_soft_clipped.expected	0,54	2,331	0,415
# Distribution of aligned template coordinates.
# Use 'grep ^FTCOORD | cut -f 2-' to extract this part.
FTCOORD	1_soft_clipped.expected	0
FTCOORD	1_soft_clipped.expected	1
FTCOORD	1_soft_clipped.expected	2
# Classification of amplicon status.  Columns are
# number with both primers from this amplicon, number with
# primers from different amplicon, and number with a position
# not matching any valid amplicon primer site
# Use 'grep ^FAMP | cut -f 2-' to extract this part.
FAMP	1_soft_clipped.expected	0	2	0	2
FAMP	1_soft_clipped.expected	1	2	0	1
FAMP	1_soft_clipped.expected	2	0	0	1
# Summary stats.
# Use 'grep ^FSS | cut -f 2-' to extract this part.
FSS	1_soft_clipped_strand.expected	raw total sequences:	8
FSS	1_soft_clipped_strand.expected	filtered sequences:	0
FSS	1_soft_clipped_strand.expected	failed primer match:	2
FSS	1_soft_clipped_strand.expected	matching sequences:	6
FSS	1_soft_clipped_strand.expected	consensus depth count < 1 and >= 1:	132	517
FSS	1_soft_clipped_strand.expected	consensus depth count < 20 and >= 20:	649	0
FSS	1_soft_clipped_strand.expected	consensus depth count < 100 and >= 100:	649	0
# Absolute matching read counts per amplicon.
# Use 'grep ^FREADS | cut -f 2-' to extract this part.
FREADS	1_soft_clipped_strand.expected	5	1
FVDEPTH	1_soft_clipped_strand.expected	2	0
# Read percentage of distribution between amplicons.
# Use 'grep ^FRPERC | cut -f 2-' to extract this part.
FRPERC	1_soft_clipped_strand.expected	83.333	16.667
# Read depth per amplicon.
# Use 'grep ^FDEPTH | cut -f 2-' to extract this part.
FDEPTH	1_soft_clipped_strand.expected	2.8	0.5
# Percentage coverage per amplicon
# Use 'grep ^FPCOV | cut -f 2-' to extract this part.
FPCOV-1	1_soft_clipped_strand.expected	100.00	51.80
FPCOV-20	1_soft_clipped_strand.expected	0.00	0.00
FPCOV-100	1_soft_clipped_strand.expected	0.00	0.00
# Depth per reference base for ALL data.
# Use 'grep ^FDP_ALL | cut -f 2-' to extract this part.
FDP_ALL	1_soft_clipped_strand.expected	0,54	2,77	3,254	0,21	1,298	0,96
# Depth per reference base for full-length valid amplicon data.
# Use 'grep ^FDP_VALID | cut -f 2-' to extract this part.
FDP_VALID	1_soft_clipped_strand.expected	0,54	2,331	0,415
# Distribution of aligned template coordinates.
# Use 'grep ^FTCOORD | cut -f 2-' to extract this part.
FTCOORD	1_soft_clipped_strand.expected	0
FTCOORD	1_soft_clipped_strand.expected	1
FTCOORD	1_soft_clipped_strand.expected	2
# Classification of amplicon status.  Columns are
# number with both primers from this amplicon, number with
# primers from different amplicon, and number with a position
# not matching any valid amplicon primer site
# Use 'grep ^FAMP | cut -f 2-' to extract this part.
FAMP	1_soft_clipped_strand.expected	0	2	0	2
FAMP	1_soft_clipped_strand.expected	1	2	0	1
FAMP	1_soft_clipped_strand.expected	2	0	0	1
# Summary stats.
# Use 'grep ^FSS | cut -f 2-' to extract this part.
FSS	2_both_clipped.expected	raw total sequences:	2
FSS	2_both_clipped.expected	filtered sequences:	0
FSS	2_both_clipped.expected	failed primer match:	0
FSS	2_both_clipped.expected	matching sequences:	2
FSS	2_both_clipped.expected	consensus depth count < 1 and >= 1:	319	330
FSS	2_both_clipped.expected	consensus depth count < 20 and >= 20:	649	0
FSS	2_both_clipped.expected	consensus depth count < 100 and >= 100:	649	0
# Absolute matching read counts per amplicon.
# Use 'grep ^FREADS | cut -f 2-' to extract this part.
FREADS	2_both_clipped.expected	2	0
FVDEPTH	2_both_clipped.expected	2	0
# Read percentage of distribution between amplicons.
# Use 'grep ^FRPERC | cut -f 2-' to extract this part.
FRPERC	2_both_clipped.expected	100.000	0.000
# Read depth per amplicon.
# Use 'grep ^FDEPTH | cut -f 2-' to extract this part.
FDEPTH	2_both_clipped.expected	2.0	0.0
# Percentage coverage per amplicon
# Use 'grep ^FPCOV | cut -f 2-' to extract this part.
FPCOV-1	2_both_clipped.expected	100.00	0.00
FPCOV-20	2_both_clipped.expected	0.00	0.00
FPCOV-100	2_both_clipped.expected	0.00	0.00
# Depth per reference base for ALL data.
# Use 'grep ^FDP_ALL | cut -f 2-' to extract this part.
FDP_ALL	2_both_clipped.expected	0,54	2,331	0,415
# Depth per reference base for full-length valid amplicon data.
# Use 'grep ^FDP_VALID | cut -f 2-' to extract this part.
FDP_VALID	2_both_clipped.expected	0,54	2,331	0,415
# Distribution of aligned template coordinates.
# Use 'grep ^FTCOORD | cut -f 2-' to extract this part.
FTCOORD	2_both_clipped.expected	0
FTCOORD	2_both_clipped.expected	1
FTCOORD	2_both_clipped.expected	2
# Classification of amplicon status.  Columns are
# number with both primers from this amplicon, number with
# primers from different amplicon, and number with a position
# not matching any valid amplicon primer site
# Use 'grep ^FAMP | cut -f 2-' to extract this part.
FAMP	2_both_clipped.expected	0	2	0	0
FAMP	2_both_clipped.expected	1	2	0	0
FAMP	2_both_clipped.expected	2	0	0	0
# Summary stats.
# Use 'grep ^CSS | cut -f 2-' to extract this part.
CSS	COMBINED	raw total sequences:	26
CSS	COMBINED	filtered sequences:	0
CSS	COMBINED	failed primer match:	6
CSS	COMBINED	matching sequences:	20
CSS	COMBINED	consensus depth count < 1 and >= 1:	649	0
CSS	COMBINED	consensus depth count < 20 and >= 20:	649	0
CSS	COMBINED	consensus depth count < 100 and >= 100:	649	0
# Absolute matching read counts per amplicon.
# Use 'grep ^CREADS | cut -f 2-' to extract this part.
CREADS	COMBINED	17	3
CVDEPTH	COMBINED	8	0
CREADS	MEAN	4.2	0.8
CREADS	STDDEV	1.3	0.4
# Read percentage of distribution between amplicons.
# Use 'grep ^CRPERC | cut -f 2-' to extract this part.
CRPERC	COMBINED	87.500	12.500
CRPERC	MEAN	87.500	12.500
CRPERC	STDDEV	7.217	7.217
# Read depth per amplicon.
# Use 'grep ^CDEPTH | cut -f 2-' to extract this part.
CDEPTH	COMBINED	10.4	1.6
CDEPTH	MEAN	2.6	0.4
CDEPTH	STDDEV	0.3	0.2
CPCOV-1	MEAN	100.0	38.9
CPCOV-1	STDDEV	0.0	22.4
CPCOV-20	MEAN	0.0	0.0
CPCOV-20	STDDEV	0.0	0.0
CPCOV-100	MEAN	0.0	0.0
CPCOV-100	STDDEV	0.0	0.0
# Depth per reference base for ALL data.
# Use 'grep ^CDP_ALL | cut -f 2-' to extract this part.
CDP_ALL	COMBINED	0,54	8,77	11,254	0,21	1,4	3,294	0,96
# Depth per reference base for full-length valid amplicon data.
# Use 'grep ^CDP_VALID | cut -f 2-' to extract this part.
CDP_VALID	COMBINED	0,54	8,331	0,415
# Distribution of aligned template coordinates.
# Use 'grep ^CTCOORD | cut -f 2-' to extract this part.
CTCOORD	COMBINED	0
CTCOORD	COMBINED	1
CTCOORD	COMBINED	2
# Classification of amplicon status.  Columns are
# number with both primers from this amplicon, number with
# primers from different amplicon, and number with a position
# not matching any valid amplicon primer site
# Use 'grep ^CAMP | cut -f 2-' to extract this part.
CAMP	COMBINED	0	8	0	6
CAMP	COMBINED	1	8	0	3
CAMP	COMBINED	2	0	0	3
