%
% API Documentation for nMOLDYN
% Module nMOLDYN.Analysis.Template
%
% Generated by epydoc 3.0.1
% [Thu Oct  8 16:59:59 2009]
%

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%%                          Module Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}|(}
\section{Module nMOLDYN.Analysis.Template}

    \label{nMOLDYN:Analysis:Template}
This modules implements the estimate, serial and parrallel templates for 
all analysis.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                               Functions                               %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsection{Functions}

    \label{nMOLDYN:Analysis:Template:startSlaves}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.startSlaves \textit{(function)}}

    \vspace{0.5ex}

\hspace{.8\funcindent}\begin{boxedminipage}{\funcwidth}

    \raggedright \textbf{startSlaves}(\textit{taskName}, \textit{pyroServer}, \textit{pyroNodes})

    \vspace{-1.5ex}

    \rule{\textwidth}{0.5\fboxrule}
\setlength{\parskip}{2ex}
    Starts the slaves.

\setlength{\parskip}{1ex}
      \textbf{Parameters}
      \vspace{-1ex}

      \begin{quote}
        \begin{Ventry}{xxxxxxxxxx}

          \item[pyroServer]

          the type of pyro server. One of 'multiprocessor' or 'cluster'.

            {\it (type=string.)}

          \item[pyroNodes]

          a dictionnary whose keys are the name of the nodes and the value 
          the number of cpus to allocate to this node.

            {\it (type=dict.)}

        \end{Ventry}

      \end{quote}

    \end{boxedminipage}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                               Variables                               %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsection{Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\raggedright n\-m\-o\-l\-d\-y\-n\-\_\-p\-a\-c\-k\-a\-g\-e\-\_\-p\-a\-t\-h\- & \raggedright \textbf{Value:} 
{\tt os.path.dirname(os.path.split(\_\_file\_\_) [0])}&\\
\cline{1-2}
\end{longtable}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerAtom \textit{(class)}|(}
\subsection{Class SerialPerAtom}

    \label{nMOLDYN:Analysis:Template:SerialPerAtom}
Template class for an analysis atom-by-atom ran in serial mode.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}

    \label{nMOLDYN:Analysis:Template:SerialPerAtom:internalRun}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerAtom \textit{(class)}!nMOLDYN.Analysis.Template.SerialPerAtom.internalRun \textit{(method)}}

    \vspace{0.5ex}

\hspace{.8\funcindent}\begin{boxedminipage}{\funcwidth}

    \raggedright \textbf{internalRun}(\textit{self})

    \vspace{-1.5ex}

    \rule{\textwidth}{0.5\fboxrule}
\setlength{\parskip}{2ex}
    Performs the analysis in serial mode.

\setlength{\parskip}{1ex}
    \end{boxedminipage}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerAtom \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerAtom \textit{(class)}|(}
\subsection{Class ParallelPerAtom}

    \label{nMOLDYN:Analysis:Template:ParallelPerAtom}
Template class for an analysis atom-by-atom ran in parallel mode.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}

    \label{nMOLDYN:Analysis:Template:ParallelPerAtom:internalRun}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerAtom \textit{(class)}!nMOLDYN.Analysis.Template.ParallelPerAtom.internalRun \textit{(method)}}

    \vspace{0.5ex}

\hspace{.8\funcindent}\begin{boxedminipage}{\funcwidth}

    \raggedright \textbf{internalRun}(\textit{self})

    \vspace{-1.5ex}

    \rule{\textwidth}{0.5\fboxrule}
\setlength{\parskip}{2ex}
    Performs the analysis in parallel mode.

\setlength{\parskip}{1ex}
    \end{boxedminipage}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerAtom \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerFrame \textit{(class)}|(}
\subsection{Class SerialPerFrame}

    \label{nMOLDYN:Analysis:Template:SerialPerFrame}
Template class for an analysis atom-by-atom ran in serial mode.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}

    \label{nMOLDYN:Analysis:Template:SerialPerFrame:internalRun}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerFrame \textit{(class)}!nMOLDYN.Analysis.Template.SerialPerFrame.internalRun \textit{(method)}}

    \vspace{0.5ex}

\hspace{.8\funcindent}\begin{boxedminipage}{\funcwidth}

    \raggedright \textbf{internalRun}(\textit{self})

    \vspace{-1.5ex}

    \rule{\textwidth}{0.5\fboxrule}
\setlength{\parskip}{2ex}
    Performs the analysis in serial mode.

\setlength{\parskip}{1ex}
    \end{boxedminipage}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerFrame \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerFrame \textit{(class)}|(}
\subsection{Class ParallelPerFrame}

    \label{nMOLDYN:Analysis:Template:ParallelPerFrame}
Template class for an analysis frame-by-frame ran in parallel mode.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}

    \label{nMOLDYN:Analysis:Template:ParallelPerFrame:internalRun}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerFrame \textit{(class)}!nMOLDYN.Analysis.Template.ParallelPerFrame.internalRun \textit{(method)}}

    \vspace{0.5ex}

\hspace{.8\funcindent}\begin{boxedminipage}{\funcwidth}

    \raggedright \textbf{internalRun}(\textit{self})

    \vspace{-1.5ex}

    \rule{\textwidth}{0.5\fboxrule}
\setlength{\parskip}{2ex}
    Performs the analysis in parallel mode.

\setlength{\parskip}{1ex}
    \end{boxedminipage}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerFrame \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerGroup \textit{(class)}|(}
\subsection{Class SerialPerGroup}

    \label{nMOLDYN:Analysis:Template:SerialPerGroup}
Template class for an analysis group-by-group ran in serial mode.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}

    \label{nMOLDYN:Analysis:Template:SerialPerGroup:internalRun}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerGroup \textit{(class)}!nMOLDYN.Analysis.Template.SerialPerGroup.internalRun \textit{(method)}}

    \vspace{0.5ex}

\hspace{.8\funcindent}\begin{boxedminipage}{\funcwidth}

    \raggedright \textbf{internalRun}(\textit{self})

    \vspace{-1.5ex}

    \rule{\textwidth}{0.5\fboxrule}
\setlength{\parskip}{2ex}
    Performs the analysis in serial mode.

\setlength{\parskip}{1ex}
    \end{boxedminipage}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerGroup \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerGroup \textit{(class)}|(}
\subsection{Class ParallelPerGroup}

    \label{nMOLDYN:Analysis:Template:ParallelPerGroup}
Template class for an analysis group-by-group ran in parallel mode.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}

    \label{nMOLDYN:Analysis:Template:ParallelPerGroup:internalRun}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerGroup \textit{(class)}!nMOLDYN.Analysis.Template.ParallelPerGroup.internalRun \textit{(method)}}

    \vspace{0.5ex}

\hspace{.8\funcindent}\begin{boxedminipage}{\funcwidth}

    \raggedright \textbf{internalRun}(\textit{self})

    \vspace{-1.5ex}

    \rule{\textwidth}{0.5\fboxrule}
\setlength{\parskip}{2ex}
    Performs the analysis in parallel mode.

\setlength{\parskip}{1ex}
    \end{boxedminipage}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerGroup \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerQShell \textit{(class)}|(}
\subsection{Class SerialPerQShell}

    \label{nMOLDYN:Analysis:Template:SerialPerQShell}
Template class for an analysis qshell-by-qshell ran in serial mode.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}

    \label{nMOLDYN:Analysis:Template:SerialPerQShell:internalRun}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerQShell \textit{(class)}!nMOLDYN.Analysis.Template.SerialPerQShell.internalRun \textit{(method)}}

    \vspace{0.5ex}

\hspace{.8\funcindent}\begin{boxedminipage}{\funcwidth}

    \raggedright \textbf{internalRun}(\textit{self})

    \vspace{-1.5ex}

    \rule{\textwidth}{0.5\fboxrule}
\setlength{\parskip}{2ex}
    Performs the analysis in serial mode.

\setlength{\parskip}{1ex}
    \end{boxedminipage}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SerialPerQShell \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerQShell \textit{(class)}|(}
\subsection{Class ParallelPerQShell}

    \label{nMOLDYN:Analysis:Template:ParallelPerQShell}
Template class for an analysis qshell-by-qshell ran in parallel mode.


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}

    \label{nMOLDYN:Analysis:Template:ParallelPerQShell:internalRun}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerQShell \textit{(class)}!nMOLDYN.Analysis.Template.ParallelPerQShell.internalRun \textit{(method)}}

    \vspace{0.5ex}

\hspace{.8\funcindent}\begin{boxedminipage}{\funcwidth}

    \raggedright \textbf{internalRun}(\textit{self})

    \vspace{-1.5ex}

    \rule{\textwidth}{0.5\fboxrule}
\setlength{\parskip}{2ex}
    Performs the analysis in parallel mode.

\setlength{\parskip}{1ex}
    \end{boxedminipage}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ParallelPerQShell \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.MeanSquareDisplacement\_serial \textit{(class)}|(}
\subsection{Class MeanSquareDisplacement\_serial}

    \label{nMOLDYN:Analysis:Template:MeanSquareDisplacement_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.MeanSquareDisplacement\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:MeanSquareDisplacement})}}}}

\begin{quote}
\_\_init\_\_(), atomicMSD(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:MeanSquareDisplacement})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.MeanSquareDisplacement\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.MeanSquareDisplacement\_parallel \textit{(class)}|(}
\subsection{Class MeanSquareDisplacement\_parallel}

    \label{nMOLDYN:Analysis:Template:MeanSquareDisplacement_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.MeanSquareDisplacement\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:MeanSquareDisplacement})}}}}

\begin{quote}
\_\_init\_\_(), atomicMSD(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.MeanSquareDisplacement \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:MeanSquareDisplacement})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.MeanSquareDisplacement\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RootMeanSquareDeviation\_serial \textit{(class)}|(}
\subsection{Class RootMeanSquareDeviation\_serial}

    \label{nMOLDYN:Analysis:Template:RootMeanSquareDeviation_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.RootMeanSquareDeviation\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RootMeanSquareDeviation})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RootMeanSquareDeviation})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RootMeanSquareDeviation\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RootMeanSquareDeviation\_parallel \textit{(class)}|(}
\subsection{Class RootMeanSquareDeviation\_parallel}

    \label{nMOLDYN:Analysis:Template:RootMeanSquareDeviation_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.RootMeanSquareDeviation\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RootMeanSquareDeviation})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RootMeanSquareDeviation \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RootMeanSquareDeviation})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RootMeanSquareDeviation\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CartesianVelocityAutoCorrelationFunction\_serial \textit{(class)}|(}
\subsection{Class CartesianVelocityAutoCorrelationFunction\_serial}

    \label{nMOLDYN:Analysis:Template:CartesianVelocityAutoCorrelationFunction_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.CartesianVelocityAutoCorrelationFunction\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CartesianVelocityAutoCorrelationFunction})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CartesianVelocityAutoCorrelationFunction})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CartesianVelocityAutoCorrelationFunction\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CartesianVelocityAutoCorrelationFunction\_parallel \textit{(class)}|(}
\subsection{Class CartesianVelocityAutoCorrelationFunction\_parallel}

    \label{nMOLDYN:Analysis:Template:CartesianVelocityAutoCorrelationFunction_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.CartesianVelocityAutoCorrelationFunction\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CartesianVelocityAutoCorrelationFunction})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CartesianVelocityAutoCorrelationFunction \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CartesianVelocityAutoCorrelationFunction})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CartesianVelocityAutoCorrelationFunction\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CartesianDensityOfStates\_serial \textit{(class)}|(}
\subsection{Class CartesianDensityOfStates\_serial}

    \label{nMOLDYN:Analysis:Template:CartesianDensityOfStates_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.CartesianDensityOfStates\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CartesianDensityOfStates})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CartesianDensityOfStates})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CartesianDensityOfStates\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CartesianDensityOfStates\_parallel \textit{(class)}|(}
\subsection{Class CartesianDensityOfStates\_parallel}

    \label{nMOLDYN:Analysis:Template:CartesianDensityOfStates_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.CartesianDensityOfStates\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CartesianDensityOfStates})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CartesianDensityOfStates \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CartesianDensityOfStates})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CartesianDensityOfStates\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AutoRegressiveAnalysis\_serial \textit{(class)}|(}
\subsection{Class AutoRegressiveAnalysis\_serial}

    \label{nMOLDYN:Analysis:Template:AutoRegressiveAnalysis_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.AutoRegressiveAnalysis\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AutoRegressiveAnalysis})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AutoRegressiveAnalysis})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AutoRegressiveAnalysis\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AutoRegressiveAnalysis\_parallel \textit{(class)}|(}
\subsection{Class AutoRegressiveAnalysis\_parallel}

    \label{nMOLDYN:Analysis:Template:AutoRegressiveAnalysis_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
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&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.AutoRegressiveAnalysis\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AutoRegressiveAnalysis})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AutoRegressiveAnalysis \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AutoRegressiveAnalysis})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AutoRegressiveAnalysis\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.PassBandFilteredTrajectory\_serial \textit{(class)}|(}
\subsection{Class PassBandFilteredTrajectory\_serial}

    \label{nMOLDYN:Analysis:Template:PassBandFilteredTrajectory_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
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&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.PassBandFilteredTrajectory\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:PassBandFilteredTrajectory})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:PassBandFilteredTrajectory})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.PassBandFilteredTrajectory\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.PassBandFilteredTrajectory\_parallel \textit{(class)}|(}
\subsection{Class PassBandFilteredTrajectory\_parallel}

    \label{nMOLDYN:Analysis:Template:PassBandFilteredTrajectory_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.PassBandFilteredTrajectory\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:PassBandFilteredTrajectory})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.PassBandFilteredTrajectory \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:PassBandFilteredTrajectory})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.PassBandFilteredTrajectory\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactor\_serial \textit{(class)}|(}
\subsection{Class DynamicIncoherentStructureFactor\_serial}

    \label{nMOLDYN:Analysis:Template:DynamicIncoherentStructureFactor_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactor\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactor\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactor\_parallel \textit{(class)}|(}
\subsection{Class DynamicIncoherentStructureFactor\_parallel}

    \label{nMOLDYN:Analysis:Template:DynamicIncoherentStructureFactor_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactor\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactor\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorGaussian\_serial \textit{(class)}|(}
\subsection{Class DynamicIncoherentStructureFactorGaussian\_serial}

    \label{nMOLDYN:Analysis:Template:DynamicIncoherentStructureFactorGaussian_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorGaussian\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactorGaussian})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), getMSD(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactorGaussian})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorGaussian\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorGaussian\_parallel \textit{(class)}|(}
\subsection{Class DynamicIncoherentStructureFactorGaussian\_parallel}

    \label{nMOLDYN:Analysis:Template:DynamicIncoherentStructureFactorGaussian_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorGaussian\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactorGaussian})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), getMSD(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorGaussian \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactorGaussian})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorGaussian\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ElasticIncoherentStructureFactor\_serial \textit{(class)}|(}
\subsection{Class ElasticIncoherentStructureFactor\_serial}

    \label{nMOLDYN:Analysis:Template:ElasticIncoherentStructureFactor_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.ElasticIncoherentStructureFactor\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:ElasticIncoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:ElasticIncoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ElasticIncoherentStructureFactor\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ElasticIncoherentStructureFactor\_parallel \textit{(class)}|(}
\subsection{Class ElasticIncoherentStructureFactor\_parallel}

    \label{nMOLDYN:Analysis:Template:ElasticIncoherentStructureFactor_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.ElasticIncoherentStructureFactor\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:ElasticIncoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.ElasticIncoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:ElasticIncoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ElasticIncoherentStructureFactor\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RadiusOfGyration\_serial \textit{(class)}|(}
\subsection{Class RadiusOfGyration\_serial}

    \label{nMOLDYN:Analysis:Template:RadiusOfGyration_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.RadiusOfGyration, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.RadiusOfGyration}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.RadiusOfGyration}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.RadiusOfGyration\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RadiusOfGyration\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RadiusOfGyration})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RadiusOfGyration \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RadiusOfGyration})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RadiusOfGyration\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RadiusOfGyration\_parallel \textit{(class)}|(}
\subsection{Class RadiusOfGyration\_parallel}

    \label{nMOLDYN:Analysis:Template:RadiusOfGyration_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.RadiusOfGyration, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.RadiusOfGyration}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.RadiusOfGyration}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.RadiusOfGyration\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RadiusOfGyration\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RadiusOfGyration})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RadiusOfGyration \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RadiusOfGyration})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RadiusOfGyration\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorAR\_serial \textit{(class)}|(}
\subsection{Class DynamicIncoherentStructureFactorAR\_serial}

    \label{nMOLDYN:Analysis:Template:DynamicIncoherentStructureFactorAR_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorAR\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactorAR})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactorAR})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorAR\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorAR\_parallel \textit{(class)}|(}
\subsection{Class DynamicIncoherentStructureFactorAR\_parallel}

    \label{nMOLDYN:Analysis:Template:DynamicIncoherentStructureFactorAR_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerAtom, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerAtom}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorAR\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactorAR})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerAtom\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerAtom})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicIncoherentStructureFactorAR \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicIncoherentStructureFactorAR})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicIncoherentStructureFactorAR\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SmoothedStaticCoherentStructureFactor\_serial \textit{(class)}|(}
\subsection{Class SmoothedStaticCoherentStructureFactor\_serial}

    \label{nMOLDYN:Analysis:Template:SmoothedStaticCoherentStructureFactor_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.SmoothedStaticCoherentStructureFactor\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:SmoothedStaticCoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:SmoothedStaticCoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SmoothedStaticCoherentStructureFactor\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SmoothedStaticCoherentStructureFactor\_parallel \textit{(class)}|(}
\subsection{Class SmoothedStaticCoherentStructureFactor\_parallel}

    \label{nMOLDYN:Analysis:Template:SmoothedStaticCoherentStructureFactor_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.SmoothedStaticCoherentStructureFactor\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:SmoothedStaticCoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.SmoothedStaticCoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:SmoothedStaticCoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SmoothedStaticCoherentStructureFactor\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.PairDistributionFunction\_serial \textit{(class)}|(}
\subsection{Class PairDistributionFunction\_serial}

    \label{nMOLDYN:Analysis:Template:PairDistributionFunction_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Structure.PairDistributionFunction, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.PairDistributionFunction}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.PairDistributionFunction}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.PairDistributionFunction\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Structure.PairDistributionFunction\textit{(Section \ref{nMOLDYN:Analysis:Structure:PairDistributionFunction})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Structure.PairDistributionFunction \textit{(Section \ref{nMOLDYN:Analysis:Structure:PairDistributionFunction})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.PairDistributionFunction\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.PairDistributionFunction\_parallel \textit{(class)}|(}
\subsection{Class PairDistributionFunction\_parallel}

    \label{nMOLDYN:Analysis:Template:PairDistributionFunction_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Structure.PairDistributionFunction, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.PairDistributionFunction}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.PairDistributionFunction}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.PairDistributionFunction\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Structure.PairDistributionFunction\textit{(Section \ref{nMOLDYN:Analysis:Structure:PairDistributionFunction})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Structure.PairDistributionFunction \textit{(Section \ref{nMOLDYN:Analysis:Structure:PairDistributionFunction})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.PairDistributionFunction\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CoordinationNumber\_serial \textit{(class)}|(}
\subsection{Class CoordinationNumber\_serial}

    \label{nMOLDYN:Analysis:Template:CoordinationNumber_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Structure.CoordinationNumber, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.CoordinationNumber}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.CoordinationNumber}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.CoordinationNumber\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Structure.CoordinationNumber\textit{(Section \ref{nMOLDYN:Analysis:Structure:CoordinationNumber})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Structure.CoordinationNumber \textit{(Section \ref{nMOLDYN:Analysis:Structure:CoordinationNumber})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CoordinationNumber\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CoordinationNumber\_parallel \textit{(class)}|(}
\subsection{Class CoordinationNumber\_parallel}

    \label{nMOLDYN:Analysis:Template:CoordinationNumber_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Structure.CoordinationNumber, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.CoordinationNumber}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.CoordinationNumber}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.CoordinationNumber\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Structure.CoordinationNumber\textit{(Section \ref{nMOLDYN:Analysis:Structure:CoordinationNumber})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Structure.CoordinationNumber \textit{(Section \ref{nMOLDYN:Analysis:Structure:CoordinationNumber})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CoordinationNumber\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ScrewFitAnalysis\_serial \textit{(class)}|(}
\subsection{Class ScrewFitAnalysis\_serial}

    \label{nMOLDYN:Analysis:Template:ScrewFitAnalysis_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Structure.ScrewFitAnalysis, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.ScrewFitAnalysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.ScrewFitAnalysis}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.ScrewFitAnalysis\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Structure.ScrewFitAnalysis\textit{(Section \ref{nMOLDYN:Analysis:Structure:ScrewFitAnalysis})}}}}

\begin{quote}
\_\_init\_\_(), angularDistance(), calc(), combine(), finalize(), findGenericTransformation(), findQuaternionMatrix(), initialize(), screwMotionAnalysis()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Structure.ScrewFitAnalysis \textit{(Section \ref{nMOLDYN:Analysis:Structure:ScrewFitAnalysis})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ScrewFitAnalysis\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ScrewFitAnalysis\_parallel \textit{(class)}|(}
\subsection{Class ScrewFitAnalysis\_parallel}

    \label{nMOLDYN:Analysis:Template:ScrewFitAnalysis_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Structure.ScrewFitAnalysis, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.ScrewFitAnalysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.ScrewFitAnalysis}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.ScrewFitAnalysis\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Structure.ScrewFitAnalysis\textit{(Section \ref{nMOLDYN:Analysis:Structure:ScrewFitAnalysis})}}}}

\begin{quote}
\_\_init\_\_(), angularDistance(), calc(), combine(), finalize(), findGenericTransformation(), findQuaternionMatrix(), initialize(), screwMotionAnalysis()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Structure.ScrewFitAnalysis \textit{(Section \ref{nMOLDYN:Analysis:Structure:ScrewFitAnalysis})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ScrewFitAnalysis\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SpatialDensity\_serial \textit{(class)}|(}
\subsection{Class SpatialDensity\_serial}

    \label{nMOLDYN:Analysis:Template:SpatialDensity_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Structure.SpatialDensity, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.SpatialDensity}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.SpatialDensity}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.SpatialDensity\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Structure.SpatialDensity\textit{(Section \ref{nMOLDYN:Analysis:Structure:SpatialDensity})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), constructBasisFromAtoms(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Structure.SpatialDensity \textit{(Section \ref{nMOLDYN:Analysis:Structure:SpatialDensity})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SpatialDensity\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SpatialDensity\_parallel \textit{(class)}|(}
\subsection{Class SpatialDensity\_parallel}

    \label{nMOLDYN:Analysis:Template:SpatialDensity_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Structure.SpatialDensity, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.SpatialDensity}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.SpatialDensity}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.SpatialDensity\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Structure.SpatialDensity\textit{(Section \ref{nMOLDYN:Analysis:Structure:SpatialDensity})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), constructBasisFromAtoms(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Structure.SpatialDensity \textit{(Section \ref{nMOLDYN:Analysis:Structure:SpatialDensity})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.SpatialDensity\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.GlobalMotionFilteredTrajectory\_serial \textit{(class)}|(}
\subsection{Class GlobalMotionFilteredTrajectory\_serial}

    \label{nMOLDYN:Analysis:Template:GlobalMotionFilteredTrajectory_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.GlobalMotionFilteredTrajectory\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:GlobalMotionFilteredTrajectory})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:GlobalMotionFilteredTrajectory})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.GlobalMotionFilteredTrajectory\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.GlobalMotionFilteredTrajectory\_parallel \textit{(class)}|(}
\subsection{Class GlobalMotionFilteredTrajectory\_parallel}

    \label{nMOLDYN:Analysis:Template:GlobalMotionFilteredTrajectory_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.GlobalMotionFilteredTrajectory\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:GlobalMotionFilteredTrajectory})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.GlobalMotionFilteredTrajectory \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:GlobalMotionFilteredTrajectory})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.GlobalMotionFilteredTrajectory\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CenterOfMassTrajectory\_serial \textit{(class)}|(}
\subsection{Class CenterOfMassTrajectory\_serial}

    \label{nMOLDYN:Analysis:Template:CenterOfMassTrajectory_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.CenterOfMassTrajectory\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CenterOfMassTrajectory})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CenterOfMassTrajectory})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CenterOfMassTrajectory\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CenterOfMassTrajectory\_parallel \textit{(class)}|(}
\subsection{Class CenterOfMassTrajectory\_parallel}

    \label{nMOLDYN:Analysis:Template:CenterOfMassTrajectory_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.CenterOfMassTrajectory\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CenterOfMassTrajectory})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.CenterOfMassTrajectory \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:CenterOfMassTrajectory})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.CenterOfMassTrajectory\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.OrderParameterContactModel\_serial \textit{(class)}|(}
\subsection{Class OrderParameterContactModel\_serial}

    \label{nMOLDYN:Analysis:Template:OrderParameterContactModel_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.NMR.OrderParameterContactModel, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.NMR.OrderParameterContactModel}\multirow{2}{\BCL}{nMOLDYN.Analysis.NMR.OrderParameterContactModel}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.OrderParameterContactModel\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.NMR.OrderParameterContactModel\textit{(Section \ref{nMOLDYN:Analysis:NMR:OrderParameterContactModel})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.NMR.OrderParameterContactModel \textit{(Section \ref{nMOLDYN:Analysis:NMR:OrderParameterContactModel})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.OrderParameterContactModel\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.OrderParameterContactModel\_parallel \textit{(class)}|(}
\subsection{Class OrderParameterContactModel\_parallel}

    \label{nMOLDYN:Analysis:Template:OrderParameterContactModel_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.NMR.OrderParameterContactModel, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.NMR.OrderParameterContactModel}\multirow{2}{\BCL}{nMOLDYN.Analysis.NMR.OrderParameterContactModel}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerFrame, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerFrame}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.OrderParameterContactModel\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.NMR.OrderParameterContactModel\textit{(Section \ref{nMOLDYN:Analysis:NMR:OrderParameterContactModel})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerFrame\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerFrame})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.NMR.OrderParameterContactModel \textit{(Section \ref{nMOLDYN:Analysis:NMR:OrderParameterContactModel})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.OrderParameterContactModel\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularCorrelation\_serial \textit{(class)}|(}
\subsection{Class AngularCorrelation\_serial}

    \label{nMOLDYN:Analysis:Template:AngularCorrelation_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularCorrelation, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularCorrelation}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularCorrelation}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.AngularCorrelation\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularCorrelation\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularCorrelation})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularCorrelation \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularCorrelation})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularCorrelation\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularCorrelation\_parallel \textit{(class)}|(}
\subsection{Class AngularCorrelation\_parallel}

    \label{nMOLDYN:Analysis:Template:AngularCorrelation_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularCorrelation, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularCorrelation}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularCorrelation}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.AngularCorrelation\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularCorrelation\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularCorrelation})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularCorrelation \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularCorrelation})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularCorrelation\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RigidBodyTrajectory\_serial \textit{(class)}|(}
\subsection{Class RigidBodyTrajectory\_serial}

    \label{nMOLDYN:Analysis:Template:RigidBodyTrajectory_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.RigidBodyTrajectory\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RigidBodyTrajectory})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RigidBodyTrajectory})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RigidBodyTrajectory\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RigidBodyTrajectory\_parallel \textit{(class)}|(}
\subsection{Class RigidBodyTrajectory\_parallel}

    \label{nMOLDYN:Analysis:Template:RigidBodyTrajectory_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.RigidBodyTrajectory\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RigidBodyTrajectory})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.RigidBodyTrajectory \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:RigidBodyTrajectory})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.RigidBodyTrajectory\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ReorientationalCorrelationFunction\_serial \textit{(class)}|(}
\subsection{Class ReorientationalCorrelationFunction\_serial}

    \label{nMOLDYN:Analysis:Template:ReorientationalCorrelationFunction_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.ReorientationalCorrelationFunction\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:ReorientationalCorrelationFunction})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:ReorientationalCorrelationFunction})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ReorientationalCorrelationFunction\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ReorientationalCorrelationFunction\_parallel \textit{(class)}|(}
\subsection{Class ReorientationalCorrelationFunction\_parallel}

    \label{nMOLDYN:Analysis:Template:ReorientationalCorrelationFunction_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.ReorientationalCorrelationFunction\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:ReorientationalCorrelationFunction})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.ReorientationalCorrelationFunction \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:ReorientationalCorrelationFunction})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.ReorientationalCorrelationFunction\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularVelocityAutoCorrelationFunction\_serial \textit{(class)}|(}
\subsection{Class AngularVelocityAutoCorrelationFunction\_serial}

    \label{nMOLDYN:Analysis:Template:AngularVelocityAutoCorrelationFunction_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularVelocity, linespec=[True, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocity}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocity}}
&&\multicolumn{1}{|c}{}
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.AngularVelocityAutoCorrelationFunction\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularVelocityAutoCorrelationFunction})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularVelocity\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularVelocity})}}}}

\begin{quote}
getAngularVelocity(), qMatrix()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularVelocityAutoCorrelationFunction})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularVelocityAutoCorrelationFunction\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularVelocityAutoCorrelationFunction\_parallel \textit{(class)}|(}
\subsection{Class AngularVelocityAutoCorrelationFunction\_parallel}

    \label{nMOLDYN:Analysis:Template:AngularVelocityAutoCorrelationFunction_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularVelocity, linespec=[True, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocity}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocity}}
&&\multicolumn{1}{|c}{}
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.AngularVelocityAutoCorrelationFunction\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularVelocityAutoCorrelationFunction})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularVelocity\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularVelocity})}}}}

\begin{quote}
getAngularVelocity(), qMatrix()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularVelocityAutoCorrelationFunction \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularVelocityAutoCorrelationFunction})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularVelocityAutoCorrelationFunction\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularDensityOfStates\_serial \textit{(class)}|(}
\subsection{Class AngularDensityOfStates\_serial}

    \label{nMOLDYN:Analysis:Template:AngularDensityOfStates_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularVelocity, linespec=[True, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocity}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocity}}
&&\multicolumn{1}{|c}{}
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularDensityOfStates, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularDensityOfStates}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularDensityOfStates}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.AngularDensityOfStates\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularDensityOfStates\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularDensityOfStates})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularVelocity\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularVelocity})}}}}

\begin{quote}
getAngularVelocity(), qMatrix()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularDensityOfStates \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularDensityOfStates})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularDensityOfStates\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularDensityOfStates\_parallel \textit{(class)}|(}
\subsection{Class AngularDensityOfStates\_parallel}

    \label{nMOLDYN:Analysis:Template:AngularDensityOfStates_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularVelocity, linespec=[True, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocity}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularVelocity}}
&&\multicolumn{1}{|c}{}
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.AngularDensityOfStates, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.AngularDensityOfStates}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.AngularDensityOfStates}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.AngularDensityOfStates\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularDensityOfStates\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularDensityOfStates})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularVelocity\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularVelocity})}}}}

\begin{quote}
getAngularVelocity(), qMatrix()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.AngularDensityOfStates \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:AngularDensityOfStates})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.AngularDensityOfStates\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.OrderParameter\_serial \textit{(class)}|(}
\subsection{Class OrderParameter\_serial}

    \label{nMOLDYN:Analysis:Template:OrderParameter_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.NMR.OrderParameter, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.NMR.OrderParameter}\multirow{2}{\BCL}{nMOLDYN.Analysis.NMR.OrderParameter}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.OrderParameter\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.NMR.OrderParameter\textit{(Section \ref{nMOLDYN:Analysis:NMR:OrderParameter})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.NMR.OrderParameter \textit{(Section \ref{nMOLDYN:Analysis:NMR:OrderParameter})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.OrderParameter\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.OrderParameter\_parallel \textit{(class)}|(}
\subsection{Class OrderParameter\_parallel}

    \label{nMOLDYN:Analysis:Template:OrderParameter_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.NMR.OrderParameter, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.NMR.OrderParameter}\multirow{2}{\BCL}{nMOLDYN.Analysis.NMR.OrderParameter}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerGroup, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerGroup}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.OrderParameter\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.NMR.OrderParameter\textit{(Section \ref{nMOLDYN:Analysis:NMR:OrderParameter})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerGroup\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerGroup})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.NMR.OrderParameter \textit{(Section \ref{nMOLDYN:Analysis:NMR:OrderParameter})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.OrderParameter\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.QuasiHarmonicAnalysis\_serial \textit{(class)}|(}
\subsection{Class QuasiHarmonicAnalysis\_serial}

    \label{nMOLDYN:Analysis:Template:QuasiHarmonicAnalysis_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Dynamics.QuasiHarmonicAnalysis, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Dynamics.QuasiHarmonicAnalysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Dynamics.QuasiHarmonicAnalysis}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.QuasiHarmonicAnalysis\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Dynamics.QuasiHarmonicAnalysis\textit{(Section \ref{nMOLDYN:Analysis:Dynamics:QuasiHarmonicAnalysis})}}}}

\begin{quote}
\_\_init\_\_(), initialize(), internalRun()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Dynamics.QuasiHarmonicAnalysis \textit{(Section \ref{nMOLDYN:Analysis:Dynamics:QuasiHarmonicAnalysis})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.QuasiHarmonicAnalysis\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicCoherentStructureFactor\_serial \textit{(class)}|(}
\subsection{Class DynamicCoherentStructureFactor\_serial}

    \label{nMOLDYN:Analysis:Template:DynamicCoherentStructureFactor_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerQShell, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerQShell}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerQShell}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicCoherentStructureFactor\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicCoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerQShell\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerQShell})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicCoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicCoherentStructureFactor\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicCoherentStructureFactor\_parallel \textit{(class)}|(}
\subsection{Class DynamicCoherentStructureFactor\_parallel}

    \label{nMOLDYN:Analysis:Template:DynamicCoherentStructureFactor_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerQShell, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerQShell}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerQShell}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicCoherentStructureFactor\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicCoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerQShell\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerQShell})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicCoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicCoherentStructureFactor\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.StaticCoherentStructureFactor\_serial \textit{(class)}|(}
\subsection{Class StaticCoherentStructureFactor\_serial}

    \label{nMOLDYN:Analysis:Template:StaticCoherentStructureFactor_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerQShell, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerQShell}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerQShell}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.StaticCoherentStructureFactor\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:StaticCoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerQShell\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerQShell})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:StaticCoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.StaticCoherentStructureFactor\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.StaticCoherentStructureFactor\_parallel \textit{(class)}|(}
\subsection{Class StaticCoherentStructureFactor\_parallel}

    \label{nMOLDYN:Analysis:Template:StaticCoherentStructureFactor_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerQShell, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerQShell}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerQShell}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.StaticCoherentStructureFactor\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor\textit{(Section \ref{nMOLDYN:Analysis:Scattering:StaticCoherentStructureFactor})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerQShell\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerQShell})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.StaticCoherentStructureFactor \textit{(Section \ref{nMOLDYN:Analysis:Scattering:StaticCoherentStructureFactor})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.StaticCoherentStructureFactor\_parallel \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicCoherentStructureFactorAR\_serial \textit{(class)}|(}
\subsection{Class DynamicCoherentStructureFactorAR\_serial}

    \label{nMOLDYN:Analysis:Template:DynamicCoherentStructureFactorAR_serial}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.SerialPerQShell, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.SerialPerQShell}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.SerialPerQShell}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicCoherentStructureFactorAR\_serial}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicCoherentStructureFactorAR})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.SerialPerQShell\textit{(Section \ref{nMOLDYN:Analysis:Template:SerialPerQShell})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicCoherentStructureFactorAR})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicCoherentStructureFactorAR\_serial \textit{(class)}|)}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                           Class Description                           %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicCoherentStructureFactorAR\_parallel \textit{(class)}|(}
\subsection{Class DynamicCoherentStructureFactorAR\_parallel}

    \label{nMOLDYN:Analysis:Template:DynamicCoherentStructureFactorAR_parallel}
\begin{tabular}{cccccccc}
% Line for nMOLDYN.Analysis.Structure.Analysis, linespec=[False]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Structure.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Structure.Analysis}}
&&
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&&
  \\
% Line for nMOLDYN.Analysis.Analysis.Analysis, linespec=[False, True]
\multicolumn{2}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}\multirow{2}{\BCL}{nMOLDYN.Analysis.Analysis.Analysis}}
&&
&&\multicolumn{1}{|c}{}
  \\\cline{3-3}
  &&\multicolumn{1}{c|}{}
&&
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR}\multirow{2}{\BCL}{nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
% Line for nMOLDYN.Analysis.Template.ParallelPerQShell, linespec=[True]
\multicolumn{4}{r}{\settowidth{\BCL}{nMOLDYN.Analysis.Template.ParallelPerQShell}\multirow{2}{\BCL}{nMOLDYN.Analysis.Template.ParallelPerQShell}}
&&\multicolumn{1}{|c}{}
  \\\cline{5-5}
  &&&&\multicolumn{1}{c|}{}
&\multicolumn{1}{|c}{}&
  \\
&&&&\multicolumn{2}{l}{\textbf{nMOLDYN.Analysis.Template.DynamicCoherentStructureFactorAR\_parallel}}
\end{tabular}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                                Methods                                %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Methods}


\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR\textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicCoherentStructureFactorAR})}}}}

\begin{quote}
\_\_init\_\_(), calc(), combine(), finalize(), initialize()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Analysis.Analysis\textit{(Section \ref{nMOLDYN:Analysis:Analysis:Analysis})}}}}

\begin{quote}
analysisTime(), buildJobInfo(), buildTimeInfo(), deuterationSelection(), groupSelection(), parseInputParameters(), preLoadTrajectory(), runAnalysis(), saveAnalysis(), setInputParameters(), subsetSelection(), updateJobProgress(), weightingScheme()
\end{quote}

\large{\textbf{\textit{Inherited from nMOLDYN.Analysis.Template.ParallelPerQShell\textit{(Section \ref{nMOLDYN:Analysis:Template:ParallelPerQShell})}}}}

\begin{quote}
internalRun()
\end{quote}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%                            Class Variables                            %%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

  \subsubsection{Class Variables}

    \vspace{-1cm}
\hspace{\varindent}\begin{longtable}{|p{\varnamewidth}|p{\vardescrwidth}|l}
\cline{1-2}
\cline{1-2} \centering \textbf{Name} & \centering \textbf{Description}& \\
\cline{1-2}
\endhead\cline{1-2}\multicolumn{3}{r}{\small\textit{continued on next page}}\\\endfoot\cline{1-2}
\endlastfoot\multicolumn{2}{|l|}{\textit{Inherited from nMOLDYN.Analysis.Scattering.DynamicCoherentStructureFactorAR \textit{(Section \ref{nMOLDYN:Analysis:Scattering:DynamicCoherentStructureFactorAR})}}}\\
\multicolumn{2}{|p{\varwidth}|}{\raggedright canBeEstimated, default, inputParametersNames, shortName}\\
\cline{1-2}
\end{longtable}

    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}!nMOLDYN.Analysis.Template.DynamicCoherentStructureFactorAR\_parallel \textit{(class)}|)}
    \index{nMOLDYN \textit{(package)}!nMOLDYN.Analysis \textit{(package)}!nMOLDYN.Analysis.Template \textit{(module)}|)}
