# LaTeX2HTML 2K.1beta (1.62)
# Associate internals original text with physical files.


$key = q/rmsd_theory/;
$ref_files{$key} = "$dir".q|node56.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:gamma/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:rog_num/;
$ref_files{$key} = "$dir".q|node60.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:qha_trajectory/;
$ref_files{$key} = "$dir".q|node104.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_MMTK/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:sqw_2/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Kneller:1991/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/discover_to_mmtk/;
$ref_files{$key} = "$dir".q|node25.html|; 
$noresave{$key} = "$nosave";

$key = q/opcm_parameters/;
$ref_files{$key} = "$dir".q|node177.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Scientific2/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:a/;
$ref_files{$key} = "$dir".q|node193.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:minimize_rot_quat_2/;
$ref_files{$key} = "$dir".q|node87.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:pdf/;
$ref_files{$key} = "$dir".q|node156.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Calligari/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:d_dos/;
$ref_files{$key} = "$dir".q|node52.html|; 
$noresave{$key} = "$nosave";

$key = q/frame_snapshot/;
$ref_files{$key} = "$dir".q|node29.html|; 
$noresave{$key} = "$nosave";

$key = q/msd_parameters/;
$ref_files{$key} = "$dir".q|node53.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:vacf_ar/;
$ref_files{$key} = "$dir".q|node96.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:sqw_dos/;
$ref_files{$key} = "$dir".q|node68.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Hinsen:2001/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:omega_prime_quat_dot_/;
$ref_files{$key} = "$dir".q|node112.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_TclTk/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:mem_finc/;
$ref_files{$key} = "$dir".q|node134.html|; 
$noresave{$key} = "$nosave";

$key = q/sd_theory/;
$ref_files{$key} = "$dir".q|node163.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:export_plot/;
$ref_files{$key} = "$dir".q|node180.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:c_omgomg/;
$ref_files{$key} = "$dir".q|node112.html|; 
$noresave{$key} = "$nosave";

$key = q/pbft_parameters/;
$ref_files{$key} = "$dir".q|node77.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:deuteration_selection_from_the_loaded_trajectory/;
$ref_files{$key} = "$dir".q|node43.html|; 
$noresave{$key} = "$nosave";

$key = q/msd/;
$ref_files{$key} = "$dir".q|node51.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:subset_selection_file/;
$ref_files{$key} = "$dir".q|node38.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Geiger:1990/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:namd_converter/;
$ref_files{$key} = "$dir".q|node27.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_VanHove/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:dacf/;
$ref_files{$key} = "$dir".q|node193.html|; 
$noresave{$key} = "$nosave";

$key = q/rcf/;
$ref_files{$key} = "$dir".q|node107.html|; 
$noresave{$key} = "$nosave";

$key = q/sfa/;
$ref_files{$key} = "$dir".q|node166.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:atomic_number/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/disfar/;
$ref_files{$key} = "$dir".q|node133.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Papoulis:1991/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:dlpoly_converter/;
$ref_files{$key} = "$dir".q|node24.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:memory_function_discrete/;
$ref_files{$key} = "$dir".q|node98.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:stability/;
$ref_files{$key} = "$dir".q|node96.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Makhoul:1975/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_NetCDF/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Rog/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:group_selection_file/;
$ref_files{$key} = "$dir".q|node46.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:ar/;
$ref_files{$key} = "$dir".q|node95.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_NAMD/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:file_browser/;
$ref_files{$key} = "$dir".q|node20.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:msd_input_file/;
$ref_files{$key} = "$dir".q|node191.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_vanRossum/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:vacf/;
$ref_files{$key} = "$dir".q|node69.html|; 
$noresave{$key} = "$nosave";

$key = q/opcm/;
$ref_files{$key} = "$dir".q|node175.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:group_selection_from_an_expression_string/;
$ref_files{$key} = "$dir".q|node48.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Burg/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Salmon/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:cn/;
$ref_files{$key} = "$dir".q|node160.html|; 
$noresave{$key} = "$nosave";

$key = q/dcsfar/;
$ref_files{$key} = "$dir".q|node125.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:finc/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/amber_to_mmtk/;
$ref_files{$key} = "$dir".q|node22.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:discover_converter/;
$ref_files{$key} = "$dir".q|node25.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Bruschweiler/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/nmr_menu/;
$ref_files{$key} = "$dir".q|node170.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:fqt_coh_num/;
$ref_files{$key} = "$dir".q|node122.html|; 
$noresave{$key} = "$nosave";

$key = q/ados_parameters/;
$ref_files{$key} = "$dir".q|node117.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:qha_lci/;
$ref_files{$key} = "$dir".q|node104.html|; 
$noresave{$key} = "$nosave";

$key = q/vacf_theory/;
$ref_files{$key} = "$dir".q|node68.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:main_dialog/;
$ref_files{$key} = "$dir".q|node18.html|; 
$noresave{$key} = "$nosave";

$key = q/running_modes/;
$ref_files{$key} = "$dir".q|node49.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:dcsfar/;
$ref_files{$key} = "$dir".q|node127.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Hinsen:2000/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/atom_selection/;
$ref_files{$key} = "$dir".q|node36.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_nMOLDYN1/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cn_theory/;
$ref_files{$key} = "$dir".q|node159.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_matplotlib/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/pbft_theory/;
$ref_files{$key} = "$dir".q|node76.html|; 
$noresave{$key} = "$nosave";

$key = q/pdf/;
$ref_files{$key} = "$dir".q|node154.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:ac_per_triplet/;
$ref_files{$key} = "$dir".q|node64.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:animation/;
$ref_files{$key} = "$dir".q|node181.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:xi_0/;
$ref_files{$key} = "$dir".q|node100.html|; 
$noresave{$key} = "$nosave";

$key = q/qha/;
$ref_files{$key} = "$dir".q|node103.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Pyrex/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/deuteration_selection_from_a_selection_file/;
$ref_files{$key} = "$dir".q|node42.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_VMD/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:benchmark/;
$ref_files{$key} = "$dir".q|node187.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Schofield/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/nmoldyn_input_files/;
$ref_files{$key} = "$dir".q|node191.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:rcf/;
$ref_files{$key} = "$dir".q|node109.html|; 
$noresave{$key} = "$nosave";

$key = q/fca/;
$ref_files{$key} = "$dir".q|node193.html|; 
$noresave{$key} = "$nosave";

$key = q/global_introduction/;
$ref_files{$key} = "$dir".q|node5.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Tildesley/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/rog_theory/;
$ref_files{$key} = "$dir".q|node60.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:msd_vacf_x/;
$ref_files{$key} = "$dir".q|node99.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:detbal_corr/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/disfg_theory/;
$ref_files{$key} = "$dir".q|node138.html|; 
$noresave{$key} = "$nosave";

$key = q/vasp_to_mmtk/;
$ref_files{$key} = "$dir".q|node28.html|; 
$noresave{$key} = "$nosave";

$key = q/analysis_menu/;
$ref_files{$key} = "$dir".q|node34.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Amber/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_MaterialsStudio/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/convert_netcdf_ascii/;
$ref_files{$key} = "$dir".q|node30.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Refield/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:qha/;
$ref_files{$key} = "$dir".q|node105.html|; 
$noresave{$key} = "$nosave";

$key = q/disfar_parameters/;
$ref_files{$key} = "$dir".q|node135.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:q_dual/;
$ref_files{$key} = "$dir".q|node130.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Szabo:1982bis/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/pbft/;
$ref_files{$key} = "$dir".q|node75.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Pyro/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Rose/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:beta_j/;
$ref_files{$key} = "$dir".q|node96.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:moments/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/rcf_theory/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_CHARMM/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:d_ortho/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:s/;
$ref_files{$key} = "$dir".q|node193.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:rbt/;
$ref_files{$key} = "$dir".q|node88.html|; 
$noresave{$key} = "$nosave";

$key = q/cn/;
$ref_files{$key} = "$dir".q|node158.html|; 
$noresave{$key} = "$nosave";

$key = q/group_selection/;
$ref_files{$key} = "$dir".q|node45.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Brigham/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/ac_theory/;
$ref_files{$key} = "$dir".q|node64.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:sd/;
$ref_files{$key} = "$dir".q|node164.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:op/;
$ref_files{$key} = "$dir".q|node173.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_ncgen/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:ados/;
$ref_files{$key} = "$dir".q|node117.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:msd/;
$ref_files{$key} = "$dir".q|node53.html|; 
$noresave{$key} = "$nosave";

$key = q/rog_parameters/;
$ref_files{$key} = "$dir".q|node61.html|; 
$noresave{$key} = "$nosave";

$key = q/vacf_parameters/;
$ref_files{$key} = "$dir".q|node69.html|; 
$noresave{$key} = "$nosave";

$key = q/running_nmoldyn_from_the_command_line_interface/;
$ref_files{$key} = "$dir".q|node189.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:mass_specie/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_X-PLOR/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_CeCILL/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/avacf_theory/;
$ref_files{$key} = "$dir".q|node112.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:vasp_converter/;
$ref_files{$key} = "$dir".q|node28.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:rog/;
$ref_files{$key} = "$dir".q|node60.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:msd_autostart_file/;
$ref_files{$key} = "$dir".q|node190.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:y_q/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:subset_selection/;
$ref_files{$key} = "$dir".q|node37.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:qha_gci/;
$ref_files{$key} = "$dir".q|node104.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:sqw_1/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/rbt_theory/;
$ref_files{$key} = "$dir".q|node84.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:xi_division/;
$ref_files{$key} = "$dir".q|node98.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:msd_n/;
$ref_files{$key} = "$dir".q|node52.html|; 
$noresave{$key} = "$nosave";

$key = q/op_theory/;
$ref_files{$key} = "$dir".q|node172.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:xi_z/;
$ref_files{$key} = "$dir".q|node98.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:tt_t_correl/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_VASP/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_pywin32/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/documentation/;
$ref_files{$key} = "$dir".q|node184.html|; 
$noresave{$key} = "$nosave";

$key = q/group_selection_from_a_selection_file/;
$ref_files{$key} = "$dir".q|node46.html|; 
$noresave{$key} = "$nosave";

$key = q/namd_to_mmtk/;
$ref_files{$key} = "$dir".q|node27.html|; 
$noresave{$key} = "$nosave";

$key = q/mailing_list/;
$ref_files{$key} = "$dir".q|node185.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:delta/;
$ref_files{$key} = "$dir".q|node85.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:scsf/;
$ref_files{$key} = "$dir".q|node147.html|; 
$noresave{$key} = "$nosave";

$key = q/animation/;
$ref_files{$key} = "$dir".q|node181.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:ara/;
$ref_files{$key} = "$dir".q|node101.html|; 
$noresave{$key} = "$nosave";

$key = q/sfa_theory/;
$ref_files{$key} = "$dir".q|node167.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_nMOLDYN2/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:frame_snapshot/;
$ref_files{$key} = "$dir".q|node29.html|; 
$noresave{$key} = "$nosave";

$key = q/ac/;
$ref_files{$key} = "$dir".q|node63.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:rmsd_num/;
$ref_files{$key} = "$dir".q|node56.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:deuteration_selection_file/;
$ref_files{$key} = "$dir".q|node42.html|; 
$noresave{$key} = "$nosave";

$key = q/analysis_benchmark/;
$ref_files{$key} = "$dir".q|node187.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_OpenSource/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eisf_parameters/;
$ref_files{$key} = "$dir".q|node143.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:y_d/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:op_cii/;
$ref_files{$key} = "$dir".q|node172.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:atomic_number_specie/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:preferences_sections/;
$ref_files{$key} = "$dir".q|node32.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_PDB/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/dcsfar_theory/;
$ref_files{$key} = "$dir".q|node126.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Forcite/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eisf_theory/;
$ref_files{$key} = "$dir".q|node142.html|; 
$noresave{$key} = "$nosave";

$key = q/dos_parameters/;
$ref_files{$key} = "$dir".q|node73.html|; 
$noresave{$key} = "$nosave";

$key = q/vacf/;
$ref_files{$key} = "$dir".q|node67.html|; 
$noresave{$key} = "$nosave";

$key = q/installing_nmoldyn/;
$ref_files{$key} = "$dir".q|node8.html|; 
$noresave{$key} = "$nosave";

$key = q/comt_parameters/;
$ref_files{$key} = "$dir".q|node92.html|; 
$noresave{$key} = "$nosave";

$key = q/opcm_theory/;
$ref_files{$key} = "$dir".q|node176.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Rahman:1962/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:msd_vacf_x_discrete_2_Z/;
$ref_files{$key} = "$dir".q|node99.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:psi_n/;
$ref_files{$key} = "$dir".q|node96.html|; 
$noresave{$key} = "$nosave";

$key = q/disfg_parameters/;
$ref_files{$key} = "$dir".q|node139.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:msd_vacf_x_discrete_2/;
$ref_files{$key} = "$dir".q|node99.html|; 
$noresave{$key} = "$nosave";

$key = q/inv_Z/;
$ref_files{$key} = "$dir".q|node99.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Scientific1/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:d_quat/;
$ref_files{$key} = "$dir".q|node85.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:preferences_config_file_example/;
$ref_files{$key} = "$dir".q|node32.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:op_cii_avg/;
$ref_files{$key} = "$dir".q|node172.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Papoulis:1984/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/msd_theory/;
$ref_files{$key} = "$dir".q|node52.html|; 
$noresave{$key} = "$nosave";

$key = q/pdf_parameters/;
$ref_files{$key} = "$dir".q|node156.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:cn_total/;
$ref_files{$key} = "$dir".q|node159.html|; 
$noresave{$key} = "$nosave";

$key = q/ac_parameters/;
$ref_files{$key} = "$dir".q|node65.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Kneller:KFA/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:convert_ascii_netcdf_example/;
$ref_files{$key} = "$dir".q|node31.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Schiller/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Szabo:1982/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/rmsd_parameters/;
$ref_files{$key} = "$dir".q|node57.html|; 
$noresave{$key} = "$nosave";

$key = q/netcdf_file_format/;
$ref_files{$key} = "$dir".q|node12.html|; 
$noresave{$key} = "$nosave";

$key = q/load_netcdf_file/;
$ref_files{$key} = "$dir".q|node20.html|; 
$noresave{$key} = "$nosave";

$key = q/ara_parameters/;
$ref_files{$key} = "$dir".q|node101.html|; 
$noresave{$key} = "$nosave";

$key = q/scattering_menu/;
$ref_files{$key} = "$dir".q|node119.html|; 
$noresave{$key} = "$nosave";

$key = q/dcsf_parameters/;
$ref_files{$key} = "$dir".q|node123.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Kneller:1994/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:memory_function_equation/;
$ref_files{$key} = "$dir".q|node96.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:trajectory_set/;
$ref_files{$key} = "$dir".q|node20.html|; 
$noresave{$key} = "$nosave";

$key = q/phi_omega/;
$ref_files{$key} = "$dir".q|node112.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:subset_selection_from_a_selection_file/;
$ref_files{$key} = "$dir".q|node38.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:dcsf/;
$ref_files{$key} = "$dir".q|node123.html|; 
$noresave{$key} = "$nosave";

$key = q/quit/;
$ref_files{$key} = "$dir".q|node33.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:a_mat/;
$ref_files{$key} = "$dir".q|node86.html|; 
$noresave{$key} = "$nosave";

$key = q/scattering_introduction/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_NumPy/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eisf_rho/;
$ref_files{$key} = "$dir".q|node142.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:equal_specie/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:fqt/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:disfg/;
$ref_files{$key} = "$dir".q|node139.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:p_expansion/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/cn_parameters/;
$ref_files{$key} = "$dir".q|node160.html|; 
$noresave{$key} = "$nosave";

$key = q/disfg/;
$ref_files{$key} = "$dir".q|node137.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:ac/;
$ref_files{$key} = "$dir".q|node65.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Lovesey/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:subset_selection_from_an_expression_string/;
$ref_files{$key} = "$dir".q|node40.html|; 
$noresave{$key} = "$nosave";

$key = q/disf_parameters/;
$ref_files{$key} = "$dir".q|node131.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:coherent/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/eisf/;
$ref_files{$key} = "$dir".q|node141.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:eisf_g_s/;
$ref_files{$key} = "$dir".q|node142.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:disf/;
$ref_files{$key} = "$dir".q|node131.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:vacf/;
$ref_files{$key} = "$dir".q|node68.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:vacf_n/;
$ref_files{$key} = "$dir".q|node68.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Democritus/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/subset_selection_from_a_selection_file/;
$ref_files{$key} = "$dir".q|node38.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:p_tt/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/msd_z/;
$ref_files{$key} = "$dir".q|node99.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:pbft/;
$ref_files{$key} = "$dir".q|node77.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:cn_number/;
$ref_files{$key} = "$dir".q|node159.html|; 
$noresave{$key} = "$nosave";

$key = q/nmoldyn_preferences_file/;
$ref_files{$key} = "$dir".q|node14.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:convert_ascii_netcdf/;
$ref_files{$key} = "$dir".q|node31.html|; 
$noresave{$key} = "$nosave";

$key = q/dcsf_theory/;
$ref_files{$key} = "$dir".q|node122.html|; 
$noresave{$key} = "$nosave";

$key = q/sscsf/;
$ref_files{$key} = "$dir".q|node149.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:eisf_compute/;
$ref_files{$key} = "$dir".q|node142.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:rmsd/;
$ref_files{$key} = "$dir".q|node57.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:p_z/;
$ref_files{$key} = "$dir".q|node96.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:d_vacf/;
$ref_files{$key} = "$dir".q|node52.html|; 
$noresave{$key} = "$nosave";

$key = q/dlpoly_to_mmtk/;
$ref_files{$key} = "$dir".q|node24.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:fqt_cumulant/;
$ref_files{$key} = "$dir".q|node138.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:p_cc/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Yip:1987/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/disf_theory/;
$ref_files{$key} = "$dir".q|node130.html|; 
$noresave{$key} = "$nosave";

$key = q/running_nmoldyn_from_the_graphical_user_interface/;
$ref_files{$key} = "$dir".q|node18.html|; 
$noresave{$key} = "$nosave";

$key = q/nmoldyn_autostart_files/;
$ref_files{$key} = "$dir".q|node190.html|; 
$noresave{$key} = "$nosave";

$key = q/about_nmoldyn/;
$ref_files{$key} = "$dir".q|node188.html|; 
$noresave{$key} = "$nosave";

$key = q/sscsf_parameters/;
$ref_files{$key} = "$dir".q|node151.html|; 
$noresave{$key} = "$nosave";

$key = q/rbt_parameters/;
$ref_files{$key} = "$dir".q|node88.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:amber_converter/;
$ref_files{$key} = "$dir".q|node22.html|; 
$noresave{$key} = "$nosave";

$key = q/op_parameters/;
$ref_files{$key} = "$dir".q|node173.html|; 
$noresave{$key} = "$nosave";

$key = q/dos_theory/;
$ref_files{$key} = "$dir".q|node72.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:opcm_s2i/;
$ref_files{$key} = "$dir".q|node176.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:deuteration_selection_from_an_expression_string/;
$ref_files{$key} = "$dir".q|node44.html|; 
$noresave{$key} = "$nosave";

$key = q/ara/;
$ref_files{$key} = "$dir".q|node94.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Geiger:1989/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:dlpoly_field_example/;
$ref_files{$key} = "$dir".q|node24.html|; 
$noresave{$key} = "$nosave";

$key = q/charmm_to_mmtk/;
$ref_files{$key} = "$dir".q|node23.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:msd_vacf/;
$ref_files{$key} = "$dir".q|node52.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:group_selection_from_the_loaded_trajectory/;
$ref_files{$key} = "$dir".q|node47.html|; 
$noresave{$key} = "$nosave";

$key = q/gmft_parameters/;
$ref_files{$key} = "$dir".q|node81.html|; 
$noresave{$key} = "$nosave";

$key = q/dos/;
$ref_files{$key} = "$dir".q|node71.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:sfa/;
$ref_files{$key} = "$dir".q|node168.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:f1z/;
$ref_files{$key} = "$dir".q|node99.html|; 
$noresave{$key} = "$nosave";

$key = q/plot/;
$ref_files{$key} = "$dir".q|node180.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:eisf_q_average/;
$ref_files{$key} = "$dir".q|node142.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:preferences_file_handling/;
$ref_files{$key} = "$dir".q|node32.html|; 
$noresave{$key} = "$nosave";

$key = q/help_menu/;
$ref_files{$key} = "$dir".q|node183.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:p_coeff_p/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:coherent_specie/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/weighting_scheme/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_DL_POLY/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_MMTK_TrajectorySet/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/dynamics_menu/;
$ref_files{$key} = "$dir".q|node50.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:ac/;
$ref_files{$key} = "$dir".q|node64.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:group_selection/;
$ref_files{$key} = "$dir".q|node45.html|; 
$noresave{$key} = "$nosave";

$key = q/sd_parameters/;
$ref_files{$key} = "$dir".q|node164.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:disfar_rho/;
$ref_files{$key} = "$dir".q|node134.html|; 
$noresave{$key} = "$nosave";

$key = q/pdb_file_format/;
$ref_files{$key} = "$dir".q|node13.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:disf_rho/;
$ref_files{$key} = "$dir".q|node130.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:deuteration_selection_from_a_selection_file/;
$ref_files{$key} = "$dir".q|node42.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:dcsfar_rho/;
$ref_files{$key} = "$dir".q|node126.html|; 
$noresave{$key} = "$nosave";

$key = q/subset_selection/;
$ref_files{$key} = "$dir".q|node37.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:opcm_s2i_avg/;
$ref_files{$key} = "$dir".q|node176.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_UCAR/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:dos/;
$ref_files{$key} = "$dir".q|node73.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_ConfigParser/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/nmoldyn_selection_files/;
$ref_files{$key} = "$dir".q|node15.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:diffusion_coeff/;
$ref_files{$key} = "$dir".q|node52.html|; 
$noresave{$key} = "$nosave";

$key = q/deuteration_selection/;
$ref_files{$key} = "$dir".q|node41.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:psi_ar_z/;
$ref_files{$key} = "$dir".q|node100.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:convert_netcdf_ascii/;
$ref_files{$key} = "$dir".q|node30.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:m_t/;
$ref_files{$key} = "$dir".q|node98.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Makhoul:1977/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/user_feedback/;
$ref_files{$key} = "$dir".q|node7.html|; 
$noresave{$key} = "$nosave";

$key = q/trajectory_conversion/;
$ref_files{$key} = "$dir".q|node21.html|; 
$noresave{$key} = "$nosave";

$key = q/preferences/;
$ref_files{$key} = "$dir".q|node32.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:b/;
$ref_files{$key} = "$dir".q|node193.html|; 
$noresave{$key} = "$nosave";

$key = q/p_jmn_y/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/sd/;
$ref_files{$key} = "$dir".q|node162.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:mem_fcoh/;
$ref_files{$key} = "$dir".q|node126.html|; 
$noresave{$key} = "$nosave";

$key = q/dcsf/;
$ref_files{$key} = "$dir".q|node121.html|; 
$noresave{$key} = "$nosave";

$key = q/new_features_in_version_3/;
$ref_files{$key} = "$dir".q|node6.html|; 
$noresave{$key} = "$nosave";

$key = q/effective_mode/;
$ref_files{$key} = "$dir".q|node182.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:plot/;
$ref_files{$key} = "$dir".q|node180.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:comt/;
$ref_files{$key} = "$dir".q|node92.html|; 
$noresave{$key} = "$nosave";

$key = q/file_menu/;
$ref_files{$key} = "$dir".q|node19.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:dcsf_rho/;
$ref_files{$key} = "$dir".q|node122.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Davies/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/comt/;
$ref_files{$key} = "$dir".q|node90.html|; 
$noresave{$key} = "$nosave";

$key = q/pdf_theory/;
$ref_files{$key} = "$dir".q|node155.html|; 
$noresave{$key} = "$nosave";

$key = q/avacf/;
$ref_files{$key} = "$dir".q|node111.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:minimize_rot/;
$ref_files{$key} = "$dir".q|node85.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Smith:1993/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:forcite_converter/;
$ref_files{$key} = "$dir".q|node26.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:sscsf/;
$ref_files{$key} = "$dir".q|node151.html|; 
$noresave{$key} = "$nosave";

$key = q/ados_theory/;
$ref_files{$key} = "$dir".q|node116.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:xi_0_2/;
$ref_files{$key} = "$dir".q|node100.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Abramowitz/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Edmonds/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:s_fft/;
$ref_files{$key} = "$dir".q|node193.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:msd_vacf_x_discrete_1/;
$ref_files{$key} = "$dir".q|node99.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Karplus/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/unix_users/;
$ref_files{$key} = "$dir".q|node9.html|; 
$noresave{$key} = "$nosave";

$key = q/structure_menu/;
$ref_files{$key} = "$dir".q|node153.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:effective_mode_viewer/;
$ref_files{$key} = "$dir".q|node182.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:msd/;
$ref_files{$key} = "$dir".q|node52.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Tk/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:minimize_rot_quat_1/;
$ref_files{$key} = "$dir".q|node87.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Altmann/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_python/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/gmft/;
$ref_files{$key} = "$dir".q|node79.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:charmm_converter/;
$ref_files{$key} = "$dir".q|node23.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:opcm/;
$ref_files{$key} = "$dir".q|node177.html|; 
$noresave{$key} = "$nosave";

$key = q/gmft_theory/;
$ref_files{$key} = "$dir".q|node80.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:dos/;
$ref_files{$key} = "$dir".q|node68.html|; 
$noresave{$key} = "$nosave";

$key = q/rog/;
$ref_files{$key} = "$dir".q|node59.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:msd_water/;
$ref_files{$key} = "$dir".q|node52.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:rmsd/;
$ref_files{$key} = "$dir".q|node56.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:fcoh/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/comt_theory/;
$ref_files{$key} = "$dir".q|node91.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:disfar/;
$ref_files{$key} = "$dir".q|node135.html|; 
$noresave{$key} = "$nosave";

$key = q/tab:nmoldyn_analysis_name/;
$ref_files{$key} = "$dir".q|node190.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:qha/;
$ref_files{$key} = "$dir".q|node104.html|; 
$noresave{$key} = "$nosave";

$key = q/scsf_theory/;
$ref_files{$key} = "$dir".q|node146.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Satchler/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/ados/;
$ref_files{$key} = "$dir".q|node115.html|; 
$noresave{$key} = "$nosave";

$key = q/window_users/;
$ref_files{$key} = "$dir".q|node10.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:avacf/;
$ref_files{$key} = "$dir".q|node113.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Berendsen/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/view_menu/;
$ref_files{$key} = "$dir".q|node179.html|; 
$noresave{$key} = "$nosave";

$key = q/sscsf_theory/;
$ref_files{$key} = "$dir".q|node150.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:dos_alpha/;
$ref_files{$key} = "$dir".q|node68.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:gauss_window/;
$ref_files{$key} = "$dir".q|node193.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:deuteration_selection/;
$ref_files{$key} = "$dir".q|node41.html|; 
$noresave{$key} = "$nosave";

$key = q/avacf_parameters/;
$ref_files{$key} = "$dir".q|node113.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Bee/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:eisf/;
$ref_files{$key} = "$dir".q|node142.html|; 
$noresave{$key} = "$nosave";

$key = q/qha_parameters/;
$ref_files{$key} = "$dir".q|node105.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:mass/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:recoil/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:subset_selection_from_the_loaded_trajectory/;
$ref_files{$key} = "$dir".q|node39.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:group_selection_from_a_selection_file/;
$ref_files{$key} = "$dir".q|node46.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:rog/;
$ref_files{$key} = "$dir".q|node61.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:gij/;
$ref_files{$key} = "$dir".q|node155.html|; 
$noresave{$key} = "$nosave";

$key = q/disfar_theory/;
$ref_files{$key} = "$dir".q|node134.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:wig_q/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:equal/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:about_nmoldyn/;
$ref_files{$key} = "$dir".q|node188.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Stone/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:eisf/;
$ref_files{$key} = "$dir".q|node143.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Discover/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:quad_form/;
$ref_files{$key} = "$dir".q|node87.html|; 
$noresave{$key} = "$nosave";

$key = q/forcite_to_mmtk/;
$ref_files{$key} = "$dir".q|node26.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:xi_ar_z/;
$ref_files{$key} = "$dir".q|node100.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:qha_dx/;
$ref_files{$key} = "$dir".q|node104.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:qha_omega/;
$ref_files{$key} = "$dir".q|node104.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_CDL/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Smith:1992/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Ahlrichs/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:incoherent/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Yip:1980/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/ara_theory/;
$ref_files{$key} = "$dir".q|node95.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_ncdump/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:detbal/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/disf/;
$ref_files{$key} = "$dir".q|node129.html|; 
$noresave{$key} = "$nosave";

$key = q/rcf_parameters/;
$ref_files{$key} = "$dir".q|node109.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:msd_discrete/;
$ref_files{$key} = "$dir".q|node52.html|; 
$noresave{$key} = "$nosave";

$key = q/scsf/;
$ref_files{$key} = "$dir".q|node145.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:p_initial/;
$ref_files{$key} = "$dir".q|node108.html|; 
$noresave{$key} = "$nosave";

$key = q/scsf_parameters/;
$ref_files{$key} = "$dir".q|node147.html|; 
$noresave{$key} = "$nosave";

$key = q/op/;
$ref_files{$key} = "$dir".q|node171.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_NetCDF_Softwares/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/tab:selection_keywords/;
$ref_files{$key} = "$dir".q|node39.html|; 
$noresave{$key} = "$nosave";

$key = q/rbt/;
$ref_files{$key} = "$dir".q|node83.html|; 
$noresave{$key} = "$nosave";

$key = q/api/;
$ref_files{$key} = "$dir".q|node186.html|; 
$noresave{$key} = "$nosave";

$key = q/rmsd/;
$ref_files{$key} = "$dir".q|node55.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:gmft/;
$ref_files{$key} = "$dir".q|node81.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:qha_at/;
$ref_files{$key} = "$dir".q|node104.html|; 
$noresave{$key} = "$nosave";

$key = q/cite_Harris/;
$ref_files{$key} = "$dir".q|node192.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:fqt_cumulant_1/;
$ref_files{$key} = "$dir".q|node138.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:sq/;
$ref_files{$key} = "$dir".q|node120.html|; 
$noresave{$key} = "$nosave";

$key = q/convert_ascii_netcdf/;
$ref_files{$key} = "$dir".q|node31.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:sd/;
$ref_files{$key} = "$dir".q|node163.html|; 
$noresave{$key} = "$nosave";

$key = q/input_and_output_files/;
$ref_files{$key} = "$dir".q|node11.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:incoherent_specie/;
$ref_files{$key} = "$dir".q|node35.html|; 
$noresave{$key} = "$nosave";

$key = q/qha_theory/;
$ref_files{$key} = "$dir".q|node104.html|; 
$noresave{$key} = "$nosave";

$key = q/dcsfar_parameters/;
$ref_files{$key} = "$dir".q|node127.html|; 
$noresave{$key} = "$nosave";

$key = q/nmoldyn_autostart_file/;
$ref_files{$key} = "$dir".q|node16.html|; 
$noresave{$key} = "$nosave";

$key = q/sfa_parameters/;
$ref_files{$key} = "$dir".q|node168.html|; 
$noresave{$key} = "$nosave";

$key = q/eq:c-s/;
$ref_files{$key} = "$dir".q|node193.html|; 
$noresave{$key} = "$nosave";

$key = q/fig:plot_settings/;
$ref_files{$key} = "$dir".q|node180.html|; 
$noresave{$key} = "$nosave";

1;

