Package nMOLDYN :: Package Analysis :: Module Analysis |
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# Module Analysis

source code

This modules implements the base class for all the analysis available in nMOLDYN.

Classes | [hide private]
| Analysis Base class for all analysis defined in nMOLDYN.
| QVectors Generates a set of QVectors within a given shell.

Functions | [hide private]
setUniverseContents(universe) Sets the contents of each object found in the universe. | source code

Variables | [hide private]
| residusChemFamily = `{'acidic':('Asp', 'Glu'), 'aliphatic':('Il`...``
| nmoldyn_package_path = `os.path.dirname(os.path.split(__file__)`...``

Function Details | [hide private]

### setUniverseContents(universe) | source code
Sets the contents of each object found in the universe. Parameters: `universe` (a instance of MMTK.Universe.) - the MMTK universe to look in.

Variables Details | [hide private]

  ### residusChemFamily Value:
      {'acidic':('Asp', 'Glu'), 'aliphatic':('Ile', 'Leu', 'Val'), 'aromatic
      ':('His', 'Phe', 'Trp', 'Tyr'), 'basic':('Arg', 'His', 'Lys'), 'charge
      d':('Arg', 'Asp', 'Glu', 'His', 'Lys'), 'hydrophobic':('Ala', 'Cys', '
      Cyx', 'Gly', 'His', 'Ile', 'Leu', 'Lys', 'Met', 'Phe', 'Thr', 'Trp', '
      Tyr', 'Val'), 'polar':('Arg', 'Asn', 'Asp', 'Cys', 'Gln', 'Glu', 'His'
      , 'Lys', 'Ser', 'Thr', 'Trp', 'Tyr'), 'small':('Ala', 'Asn', 'Asp', 'C
      ys', 'Cyx', 'Gly', 'Pro', 'Ser', 'Thr', 'Val')}

  ### nmoldyn_package_path Value:
      os.path.dirname(os.path.split(__file__) [0])