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[ Module Hierarchy | Class Hierarchy ]

# Module Hierarchy

- nMOLDYN
  - nMOLDYN.Analysis
    - nMOLDYN.Analysis.Analysis: This modules implements the base class for all the analysis available in nMOLDYN.
    - nMOLDYN.Analysis.Dynamics: Collections of classes for the determination of dynamics-related properties.
    - nMOLDYN.Analysis.NMR: Collections of classes for the determination of NMR-related properties.
    - nMOLDYN.Analysis.Scattering: Collections of classes for the determination of scattering-related properties.
    - nMOLDYN.Analysis.Slave: This modules contains the functions used by Pyro slave to perform analysis remotely.
    - nMOLDYN.Analysis.Structure: Collections of classes for the determination of structure-related properties.
    - nMOLDYN.Analysis.Template: This modules implements the estimate, serial and parrallel templates for all analysis.
  - nMOLDYN.Core
    - nMOLDYN.Core.Chemistry: This modules implements the functions and procedures that are related to chemistry.
    - nMOLDYN.Core.Config: This modules implements the procedures that handles nMOLDYN PREFERENCES.
    - nMOLDYN.Core.Error
    - nMOLDYN.Core.IOFiles: This module implements IO-related classes, functions and procedures.
    - nMOLDYN.Core.Logger: This module implements the classes used to handle the nMOLDYN logger.
    - nMOLDYN.Core.Mathematics: This modules implements the mathematics-related classes, functions and procedures.
    - nMOLDYN.Core.Misc: This modules implements the functions and procedures that can not be classified anywhere else in the library.
    - nMOLDYN.Core.Preferences: This modules stores some the nMOLDYN PREFERENCES variables that will be used throughout all nMOLDYN code.
  - nMOLDYN.GUI
    - nMOLDYN.GUI.ASCIIToNetCDFConversionDialog: This modules implements I{File-->Convert ASCII to NetCDF} dialog.
    - nMOLDYN.GUI.AnalysisBenchmarkDialog: This modules implements I{Help-->nMOLDYN benchmark} dialog.
    - nMOLDYN.GUI.AnalysisDialog: This modules implements I{Analysis-->selected analysis} dialog.
    - nMOLDYN.GUI.AnimationDialog: This modules implements I{View-->Animation} dialog.
    - nMOLDYN.GUI.CheckJobsStatusDialog: This modules implements I{Help-->Check job status} dialog.
    - nMOLDYN.GUI.GeneralInformationsDialog: This modules implements I{Help-->About nMOLDYN} dialog.
    - nMOLDYN.GUI.HTMLReader
      - nMOLDYN.GUI.HTMLReader.mfxtools
      - nMOLDYN.GUI.HTMLReader.mfxutil
      - nMOLDYN.GUI.HTMLReader.tkconst
      - nMOLDYN.GUI.HTMLReader.tkfont
      - nMOLDYN.GUI.HTMLReader.tkhtml
      - nMOLDYN.GUI.HTMLReader.tkinit
      - nMOLDYN.GUI.HTMLReader.tkutil
      - nMOLDYN.GUI.HTMLReader.tkwidget
      - nMOLDYN.GUI.HTMLReader.util
      - nMOLDYN.GUI.HTMLReader.version
    - nMOLDYN.GUI.MainDialog: This is where the main window of nMOLDYN is defined.
    - nMOLDYN.GUI.NetCDFToASCIIConversionDialog: This modules implements I{File-->Convert NetCDF to ASCII} dialog.
    - nMOLDYN.GUI.PDBSnapshotGeneratorDialog: This modules implements I{File-->Frame snapshot} dialog.
    - nMOLDYN.GUI.PlotNetCDFVariableDialog: This modules implements I{View-->Plot} dialog.
    - nMOLDYN.GUI.PreferencesDialog: This modules implements I{File-->Preferences} dialog.
    - nMOLDYN.GUI.PyroServerDialog: This modules implements I{View-->Animation} dialog.
    - nMOLDYN.GUI.SelectionDialog: This modules implements the atom selection dialog used in almost all nMOLDYN analysis.
    - nMOLDYN.GUI.Tags
    - nMOLDYN.GUI.TrajectoryConversionDialog: This modules implements I{File --> Trajectory conversion --> converter} dialog.
    - nMOLDYN.GUI.ViewEffectiveModeDialog: This modules implements I{View --> Effective Mode} dialog.
    - nMOLDYN.GUI.Widgets: This module implements all classes used for the generation of combo widgets.
  - nMOLDYN.Tests
    - nMOLDYN.Tests.ARA
      - nMOLDYN.Tests.ARA.TestsContents
      - nMOLDYN.Tests.ARA.runTests
    - nMOLDYN.Tests.AVACF
      - nMOLDYN.Tests.AVACF.TestsContents
      - nMOLDYN.Tests.AVACF.runTests
    - nMOLDYN.Tests.AnalysisTests: Test cases for analysis modules.
    - nMOLDYN.Tests.BuildTestCases
    - nMOLDYN.Tests.DCSF
      - nMOLDYN.Tests.DCSF.TestsContents
      - nMOLDYN.Tests.DCSF.runTests
    - nMOLDYN.Tests.DISF
      - nMOLDYN.Tests.DISF.TestsContents
      - nMOLDYN.Tests.DISF.runTests
    - nMOLDYN.Tests.DISFG
      - nMOLDYN.Tests.DISFG.TestsContents
      - nMOLDYN.Tests.DISFG.runTests
    - nMOLDYN.Tests.DOS
      - nMOLDYN.Tests.DOS.TestsContents
      - nMOLDYN.Tests.DOS.runTests
    - nMOLDYN.Tests.EISF
      - nMOLDYN.Tests.EISF.TestsContents
      - nMOLDYN.Tests.EISF.runTests
    - nMOLDYN.Tests.MSD
      - nMOLDYN.Tests.MSD.TestsContents
      - nMOLDYN.Tests.MSD.runTests
    - nMOLDYN.Tests.StabilityTests: Test cases for stability of the current version of nMOLDYN versus nMoldyn v2.1.0, the last stable release of nMoldyn.
    - nMOLDYN.Tests.VACF
      - nMOLDYN.Tests.VACF.TestsContents
      - nMOLDYN.Tests.VACF.runTests
  - nMOLDYN.__pkginfo__