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##contig=<ID=chrX,length=156040895>
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##ALT=<ID=DEL,Description="Deletion">
##ALT=<ID=DUP,Description="Duplication">
##ALT=<ID=INV,Description="Inversion">
##ALT=<ID=BND,Description="Translocation">
##ALT=<ID=INS,Description="Insertion">
##INFO=<ID=CIEND,Number=2,Type=Integer,Description="PE confidence interval around END">
##INFO=<ID=CIPOS,Number=2,Type=Integer,Description="PE confidence interval around POS">
##INFO=<ID=CHR2,Number=1,Type=String,Description="Chromosome for END coordinate in case of a translocation">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the structural variant">
##INFO=<ID=SVLEN,Number=1,Type=Integer,Description="End position of the structural variant">
##INFO=<ID=MAPQ,Number=1,Type=Integer,Description="Median mapping quality of paired-ends">
##INFO=<ID=RE,Number=1,Type=Integer,Description="read support">
##INFO=<ID=IMPRECISE,Number=0,Type=Flag,Description="Imprecise structural variation">
##INFO=<ID=PRECISE,Number=0,Type=Flag,Description="Precise structural variation">
##INFO=<ID=AVGLEN,Number=1,Type=Integer,Description="Length of the SV">
##INFO=<ID=SVMETHOD,Number=1,Type=String,Description="Vector of samples supporting the SV.">
##INFO=<ID=SVTYPE,Number=1,Type=String,Description="Type of the SV.">
##INFO=<ID=SUPP_VEC,Number=1,Type=String,Description="Number of samples supporting the variant.">
##INFO=<ID=SUPP,Number=1,Type=String,Description="Previous support vector">
##INFO=<ID=STRANDS,Number=1,Type=String,Description="Indicating the direction of the reads with respect to the type and breakpoint.">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=LN,Number=1,Type=Integer,Description="predicted length">
##FORMAT=<ID=DR,Number=1,Type=Integer,Description="# supporting reference,variant reads in that order">
##FORMAT=<ID=ST,Number=1,Type=String,Description="Strand of SVs">
##FORMAT=<ID=TY,Number=1,Type=String,Description="Types">
##FORMAT=<ID=CO,Number=1,Type=String,Description="Coordinates">
##FORMAT=<ID=PSV,Number=1,Type=String,Description="Previous support vector">
##INFO=<ID=SAS,Number=.,Type=Float,Description="Variant frequency in South Asian samples">
##INFO=<ID=FIN,Number=.,Type=Float,Description="Variant frequency in Finnish samples">
##INFO=<ID=HIS,Number=.,Type=Float,Description="Variant frequency in Hispanic samples">
##INFO=<ID=WHS,Number=.,Type=Float,Description="Variant frequency in white Hispanic samples">
##INFO=<ID=AFM,Number=.,Type=Float,Description="Variant frequency in African American samples">
##INFO=<ID=EAS,Number=.,Type=Float,Description="Variant frequency in East Asian samples">
##INFO=<ID=BNH,Number=.,Type=Float,Description="Variant frequency in black non-Hispanic samples">
##INFO=<ID=WHT,Number=.,Type=Float,Description="Variant frequency in white samples">
##INFO=<ID=WNH,Number=.,Type=Float,Description="Variant frequency in white non-Hispanic samples">
##INFO=<ID=SOL,Number=.,Type=Float,Description="Variant frequency in unlabeled samples, assumed to be SOL">
##bcftools_annotateVersion=1.6+htslib-1.6
##bcftools_annotateCommand=annotate -c CHROM,POS,-,REF,ALT,-,FIN,WHS,HIS,AFM,WHT,BNH,EAS,SAS,WNH,SOL -h raw/merge_20180620/eth_freq.hdr -a data/merge_20180620/ethnicity_annotations/chr22.eth.bed.gz -O z /stornext/snfs5/next-gen/scratch/ajmansfi/ccdg_cvd_merge_population_sv_paper/data/merge_20180620/id_to_alt/chr22.id_into_alt.vcf.gz; Date=Thu Jul 26 18:29:16 2018
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	02AD4429.final.survivor.vcf
22	1000	DEL000SUR	N	<DEL>	.	PASS	SUPP=3053;AVGLEN=1;SVTYPE=DEL;SVMETHOD=SURVIVORv2;CHR2=chr22;SVLEN=900000;END=900000;CIPOS=0,0;CIEND=-400,0;STRANDS=+-;FIN=0.0600801;WHS=0.118952;HIS=0.146651;AFM=0.0345487;WHT=0.164262;BNH=0.0482815;EAS=0.256145;SAS=0.0918919;WNH=0.0984299;SOL=0.0792755	GT:PSV:LN:DR:ST:TY:CO	1/1:0010000:10510600:0,0:+-:DEL:chr22_1-chr22_10510600
