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## JalviewLite Button Examples

Try out JalviewLite by pressing one of the buttons below. View the source for the examples below here (If the link doesn't work on your browser try going to this page and viewing the page source manually).
For more information on how to use the applet in your website, see the applet deployment, applet parameters, and other documentation in the links to the left.

## Ferredoxins, chloroplast precursor related UniRef50 cluster

(15 sequences x 150 residues)

| User Defined Colours, loads an associated Newick format tree file which is used to sort the alignment, and group consensus and sequence logos are shown below the alignment.
| Displays a features file on the alignment
| Associates PDB file 1GAQ with sequence FER1_MAIZE
| Displays a Multiple Sequence Alignment Based JPred Prediction for a Sequence

## RF00031 RFAM Alignment with per sequence secondary structure

| Displays an RFAM RNA fold family with secondary structure annotation

## Linked Protein and cDNA alignments for a family of Steroid Receptors

| Displays a split window view showing aligned protein and a reconstructed cDNA alignment. Proteins were aligned with Muscle (version 3.8.31, via the Jalview Desktop). Data retrieved from Uniprot and ENA, after Thornton, Need and Crews, Science 19 September 2003: 301 (5640), 1714-1717