Viewing and exporting sequence annotation reports
Much of the information retrieved by Jalview about a sequence is visualized on the alignment. Often, however, there are a huge number of ontology terms, cross-references, links to publications and other kinds of data associated with a sequence, and only some of these are shown in sequence ID tooltip. To show the full set of annotation and database links for a sequence, right-click and select the "(sequence's name)→Sequence Details ..." entry from the pop-up menu.

Annotation Reports for a range of sequences
If you would like to view database and metadata for a number of sequences, simply select them all and then use the Selection→Sequence Details ... entry in the pop-up menu.

Copying and pasting annotation to other programs
The File→Save option in the sequence annotation report window allows the report to be saved as HTML, which will preserve links and any other metadata. It is also possible to copy and paste the text to other programs, but in some cases, the HTML will not be preserved. In that case, you can toggle the display of HTML source code with the Edit→Show HTML Source drop down menu entry.